View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20959_low_10 (Length: 226)

Name: NF20959_low_10
Description: NF20959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20959_low_10
NF20959_low_10
[»] chr6 (2 HSPs)
chr6 (2-205)||(6889403-6889605)
chr6 (2-99)||(9664973-9665069)
[»] chr7 (5 HSPs)
chr7 (10-139)||(1774650-1774778)
chr7 (4-140)||(34144460-34144594)
chr7 (22-135)||(24977261-24977373)
chr7 (2-121)||(24976981-24977099)
chr7 (10-141)||(3270623-3270751)
[»] chr1 (4 HSPs)
chr1 (10-141)||(38010728-38010859)
chr1 (10-141)||(3222999-3223127)
chr1 (40-135)||(47431129-47431223)
chr1 (146-186)||(50391775-50391815)
[»] chr4 (2 HSPs)
chr4 (14-130)||(27065611-27065725)
chr4 (14-130)||(27086714-27086828)
[»] scaffold0161 (1 HSPs)
scaffold0161 (10-121)||(22711-22821)
[»] chr8 (3 HSPs)
chr8 (35-141)||(14101144-14101249)
chr8 (2-43)||(14099703-14099744)
chr8 (49-141)||(39643211-39643300)
[»] chr5 (2 HSPs)
chr5 (58-136)||(21045794-21045870)
chr5 (2-141)||(3726416-3726550)
[»] scaffold0408 (1 HSPs)
scaffold0408 (2-43)||(10045-10086)
[»] chr3 (1 HSPs)
chr3 (38-90)||(36323784-36323836)
[»] chr2 (1 HSPs)
chr2 (2-35)||(38621648-38621681)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 6889403 - 6889605
Alignment:
Q  2 agtgcaactagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  6889403 agtgcaactagactcaaataaataatttagctatttagtttataagtaaaattatgttagtttgtctttcctttgagttgttgttagttggacc-tttaa 6889501  T
Q  102 gttgggtctttagtctttaggcccattagggttactatccgttaccctcaagtgcgagtttccacctcttatacttgatccaaaccaagattcacaccgg 201  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||   ||||||||| ||| || |    
T  6889502 gttgggtctttagtctttaggtccattagggttactatccattactctcaagtgcgagtttccacctcttatacttgatttgaaccaagatccactcctg 6889601  T
Q  202 ctcc 205  Q
    ||||    
T  6889602 ctcc 6889605  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 9665069 - 9664973
Alignment:
Q  2 agtgcaactagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgacctttt 99  Q
    ||||||| |||| | |||||||||||||||||||||| |||| ||| |||||||| ||||||||||||| |||||| ||||| |||||| ||||||||    
T  9665069 agtgcaattagattaaaataaataatttagctatttaatttagaagtaaaattatattagtttgtcttt-ctttgatttgtttttagttggacctttt 9664973  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 1774778 - 1774650
Alignment:
Q  10 tagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtc 109  Q
    |||||| |||| |||||||||||||||||||||||||| | ||  ||||||||||||||||||||| ||||||| |||||| | || |||||||| |||     
T  1774778 tagactgaaatgaataatttagctatttagtttataagtataagaatgttagtttgtctttcctttaagttgttattagttgggcc-tttaagttaggta 1774680  T
Q  110 tttagtctttaggcccattagggttactat 139  Q
    |||||||||||||||| |||||||||||||    
T  1774679 tttagtctttaggcccgttagggttactat 1774650  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 34144460 - 34144594
Alignment:
Q  4 tgcaactagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagt 103  Q
    ||||| ||| ||||||| |||||||||| ||| |||||||  || || ||||| ||||||| ||||||  ||||||||||| ||||| | ||||  ||||    
T  34144460 tgcaattaggctcaaatgaataatttagatatctagtttaagagtaagattatattagtttatctttcacttgagttgttgctagttgggcctt--aagt 34144557  T
Q  104 tgggtctttagtctttaggcccattagggttactatc 140  Q
    | |||||||||||||||||||||||||||||||||||    
T  34144558 taggtctttagtctttaggcccattagggttactatc 34144594  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 24977373 - 24977261
Alignment:
Q  22 aataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtctttagtctttag 121  Q
    ||||||||||||||||||||||  || |||||||| |||||||||||||| |||||||||||  ||||| | |||||| || | ||||||||||||||||    
T  24977373 aataatttagctatttagtttaagagcaaaattatattagtttgtctttcttttgagttgtttctagttgggcctttt-agctaggtctttagtctttag 24977275  T
Q  122 gcccattagggtta 135  Q
    |  |||||||||||    
T  24977274 gttcattagggtta 24977261  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 24976981 - 24977099
Alignment:
Q  2 agtgcaactagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaa 101  Q
    ||||||| |||| | |||| |||||||||| |||||||||||  || |||||||| |||||||||||||| |||||||||||  ||||| | |||||| |    
T  24976981 agtgcaattagatttaaatgaataatttagttatttagtttaagagcaaaattatattagtttgtctttcttttgagttgtttctagttgggcctttt-a 24977079  T
Q  102 gttgggtctttagtctttag 121  Q
    | | ||| ||||||||||||    
T  24977080 gctaggtttttagtctttag 24977099  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 3270623 - 3270751
Alignment:
Q  10 tagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtc 109  Q
    |||||| |||||||| |||||| ||||||| |||  |  |||||||| |||||| |||||||  ||||||| ||||||||| | |||| |  ||| ||||    
T  3270623 tagacttaaataaatgatttagatatttagcttaagattaaaattatattagttggtctttcacttgagttattgttagttgggccttat--gttaggtc 3270720  T
Q  110 tttagtctttaggcccattagggttactatcc 141  Q
    ||||||||| || |||||||||||||||||||    
T  3270721 tttagtcttaag-cccattagggttactatcc 3270751  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 38010859 - 38010728
Alignment:
Q  10 tagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctt-tgagttgttgttagtttgaccttttaagttgggt 108  Q
    ||||||||||||||||||||| ||||||| |||| ||| | |||||| |||||||||||||| ||  |||||||| |||||| || | ||||||||||||    
T  38010859 tagactcaaataaataatttacctatttaatttagaagtataattatattagtttgtctttcattgagagttgtttttagttggatc-tttaagttgggt 38010761  T
Q  109 ctttagtctttaggcccattagggttactatcc 141  Q
    |||||||||||| || ||||||||||| |||||    
T  38010760 ctttagtctttaagctcattagggttagtatcc 38010728  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 3223127 - 3222999
Alignment:
Q  10 tagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtc 109  Q
    |||||| |||| ||||||||||||||||||||||  || |||||||| |||||||||| ||| |||||||||||| ||||| | ||  ||||||| ||||    
T  3223127 tagacttaaatgaataatttagctatttagtttaagagtaaaattatattagtttgtccttcttttgagttgttgctagttgggcc--ttaagttaggtc 3223030  T
Q  110 tttagtctttaggcccattagggttactatcc 141  Q
    ||||||| ||| ||||||||||||||| ||||    
T  3223029 tttagtc-ttaagcccattagggttaccatcc 3222999  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 47431129 - 47431223
Alignment:
Q  40 tttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtctttagtctttaggcccattagggtta 135  Q
    |||| ||| ||||| || ||||||||| |||||||| | |||||  |||||  | ||||| |||||||||||||||||||||| ||||||||||||    
T  47431129 tttagaagcaaaatcatattagtttgtatttccttttaattgtttctagtta-agctttttagttgggtctttagtctttaggtccattagggtta 47431223  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 50391775 - 50391815
Alignment:
Q  146 ccctcaagtgcgagtttccacctcttatacttgatccaaac 186  Q
    ||||||||||  |||||||||| ||||||||||||||||||    
T  50391775 ccctcaagtgtaagtttccaccacttatacttgatccaaac 50391815  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 27065611 - 27065725
Alignment:
Q  14 ctcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtcttta 113  Q
    |||||||||||||||||| |||||| |||||||| |||||||| ||||||| |||||  |||||||||||| ||||| | |||||  | ||| || ||||    
T  27065611 ctcaaataaataatttagatatttaatttataagtaaaattatattagtttatcttttatttgagttgttgctagttgggccttt--aattgagttttta 27065708  T
Q  114 gtctttaggcccattag 130  Q
    |||||||||| ||||||    
T  27065709 gtctttaggctcattag 27065725  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 27086714 - 27086828
Alignment:
Q  14 ctcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtcttta 113  Q
    |||||||||||||||||| |||||| |||||||| |||||||| ||||||| |||||  |||||||||||| ||||| | |||||  | ||| || ||||    
T  27086714 ctcaaataaataatttagatatttaatttataagtaaaattatattagtttatcttttatttgagttgttgctagttgggccttt--aattgagttttta 27086811  T
Q  114 gtctttaggcccattag 130  Q
    |||||||||| ||||||    
T  27086812 gtctttaggctcattag 27086828  T

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Target: scaffold0161 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 22711 - 22821
Alignment:
Q  10 tagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtc 109  Q
    |||||| |||||||| |||||| |||| |||||||||| |||||||| ||||| |||||||||||| | ||||| ||||||  ||| |||||||| | ||    
T  22711 tagacttaaataaatgatttagatattaagtttataagtaaaattattttagtctgtctttcctttaaattgtttttagttaaacc-tttaagttagttc 22809  T
Q  110 tttagtctttag 121  Q
    ||||||||||||    
T  22810 tttagtctttag 22821  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 14101144 - 14101249
Alignment:
Q  35 tttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtctttagtctttaggcccattagggtt 134  Q
    ||||||||| ||| | |||||| ||||||||||||||  |||||||||| |||||| | ||||| || || ||| |||||||||||||| ||||||||||    
T  14101144 tttagtttaaaagtataattatattagtttgtctttcaattgagttgtttttagttgggcctttaaa-ttaggtttttagtctttaggctcattagggtt 14101242  T
Q  135 actatcc 141  Q
    |||||||    
T  14101243 actatcc 14101249  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 14099703 - 14099744
Alignment:
Q  2 agtgcaactagactcaaataaataatttagctatttagttta 43  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  14099703 agtgcaactagactcaaataaataatttagatatttagttta 14099744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 39643211 - 39643300
Alignment:
Q  49 aaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtctttagtctttaggcccattagggttactatcc 141  Q
    |||||||| ||| ||||||||||  || |||||||| ||||| | ||||  ||||| ||||||||||||| || |||||||||||||||||||    
T  39643211 aaaattatattattttgtctttcactttagttgttgctagttgggcctt--aagttaggtctttagtcttaag-cccattagggttactatcc 39643300  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 21045794 - 21045870
Alignment:
Q  58 ttagtttgtctttcctttgagttgttgttagtttgaccttttaagttgggtctttagtctttaggcccattagggttac 136  Q
    ||||||||||||||  ||||||||||| | ||| ||||||  ||||| ||||| |||||||||||||||||||||||||    
T  21045794 ttagtttgtctttcgcttgagttgttgctcgttggacctt--aagttaggtctgtagtctttaggcccattagggttac 21045870  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 3726550 - 3726416
Alignment:
Q  2 agtgcaactagactcaaataaataatttagctatttagtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtttgaccttttaa 101  Q
    |||| ||||||||||||||||||||||||| |||||| || | ||| | |||||| ||||||||    || ||| | |||||  ||||| || | |||||    
T  3726550 agtgtaactagactcaaataaataatttagttatttatttgagaagtataattatattagtttg----tcattttaattgtttctagttggatc-tttaa 3726456  T
Q  102 gttgggtctttagtctttaggcccattagggttactatcc 141  Q
     || ||||||||||||||||  | ||||||||||||||||    
T  3726455 attaggtctttagtctttagatctattagggttactatcc 3726416  T

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Target: scaffold0408 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 10045 - 10086
Alignment:
Q  2 agtgcaactagactcaaataaataatttagctatttagttta 43  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  10045 agtgcaactagactcaaataaataatttagatatttagttta 10086  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 36323836 - 36323784
Alignment:
Q  38 agtttataagaaaaattatgttagtttgtctttcctttgagttgttgttagtt 90  Q
    |||||||||| |||||||| ||| ||||||||||||||||||||||| |||||    
T  36323836 agtttataagtaaaattatattaatttgtctttcctttgagttgttgctagtt 36323784  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 38621681 - 38621648
Alignment:
Q  2 agtgcaactagactcaaataaataatttagctat 35  Q
    ||||||||||||||||||||||||||||||||||    
T  38621681 agtgcaactagactcaaataaataatttagctat 38621648  T

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