View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20959_low_9 (Length: 244)
Name: NF20959_low_9
Description: NF20959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20959_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 54731281 - 54731056
Alignment:
| Q |
1 |
atttaatttgttagtcgttaatataaggtttgatacctgtactggcactggcataatatatataaaaatctttcaattatttcttgtgacaatgacattt |
100 |
Q |
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| T |
54731281 |
atttaatttgttagtcgttaatataaggtttgatacctgtactggcactggcataatatatataaaaatctttcaattatttcttgtgacaatgacattt |
54731182 |
T |
|
| Q |
101 |
aatgtccagttttatcatggatcaattatcaatatggttctagaatgatcaagattcgatactatgaaatatcaaagtctggctcattacttaaacgaga |
200 |
Q |
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| T |
54731181 |
aatgtccagttttatcatggatcaattatcaatatggttctagaatgatcaagattcgatactatgaaatatcaaagtctggctcattacttaaacgaga |
54731082 |
T |
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| Q |
201 |
aggagcactagccaagtagccatggc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
54731081 |
aggagcactagccaagtagccatggc |
54731056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 5305361 - 5305244
Alignment:
| Q |
1 |
atttaatttgttagtcgttaatataaggtttgatacctgtactggcactggcataatatatataaaaatctttcaattatttcttgtgacaatgacattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5305361 |
atttaatttgttagtcgttaatataaggtttgatacctgtactggcactggcataatata----aaaatctttcaattatttcttgtgacaatgacattt |
5305266 |
T |
|
| Q |
101 |
aatgtccagttttatcatggat |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
5305265 |
aatgtccagttttatcatggat |
5305244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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