View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2095_low_1 (Length: 522)
Name: NF2095_low_1
Description: NF2095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2095_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 11 - 504
Target Start/End: Original strand, 43365300 - 43365793
Alignment:
| Q |
11 |
catcatcacaacaataactagcatgttggacacctaacttacaatgttggaaccacaaattttattaataaaattgaggcacacaattttgatgaaagct |
110 |
Q |
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| T |
43365300 |
catcaacacaacaataactagcatgttggacacctaacttacaatgttggaaccacaaattttattaataaaattgaggcacacaattttgatgaaagct |
43365399 |
T |
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| Q |
111 |
tccaattagggacctttaatgaaacacttacacgtttcttgatcagcactggtaaaacacgaccctcgtagcatttgggggtgcatttccttggaacacg |
210 |
Q |
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| T |
43365400 |
tccaattagggacctttaattaaacacttacacgtttcttgatcagcactggtaaaacacgaccctcgtagcatttgggggtgcatttccttggaacacg |
43365499 |
T |
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| Q |
211 |
cactgtatatggagtcgcaaatttctctcccatatttggtagttgctttacaactcttatgtcattccggagggatgttataaaccaatcggcatcaaat |
310 |
Q |
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| T |
43365500 |
cactgtatatggagtcgcaaatttctctcccatatttggtagttgctttacaactcttatgtcattccggagggatgttataaaccaatcggcatcaaat |
43365599 |
T |
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| Q |
311 |
aattgagaaaaattgctgcaagaaaataataatcaaatattacttacaaattaaggggtacaatgaaaatgtgttctgctaccaaagaaaatattatatg |
410 |
Q |
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| T |
43365600 |
aattgagaaaaattgctgcaagaaaataataatcaaatattacttacaaattaaggggtacaatgaaaatgtgttctgctaccaaagaaaatattatatg |
43365699 |
T |
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| Q |
411 |
tgatttaagagacattcttcctgatatgatagaagtaaattgtaaacacagacctgttgtctttccagaaagatgtatgatccaatgctggaat |
504 |
Q |
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| T |
43365700 |
tgatttaagagacattcttcctgatatgatagaagtaaattgtaaacacagacctgttgtctttccagaaagatgtatgatccaatgctggaat |
43365793 |
T |
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