View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2095_low_2 (Length: 484)
Name: NF2095_low_2
Description: NF2095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2095_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 6 - 471
Target Start/End: Complemental strand, 27778647 - 27778178
Alignment:
| Q |
6 |
acaagaatgttatactattggattgaattaggttaattaggtgaaaacaaatcaagtaatggattagtggat----ttacctgcaaaggtgataggtgag |
101 |
Q |
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| T |
27778647 |
acaagaatgttacactattggattgaattaggttaattaggtgaaaacaaatcaagtaatggattagtggatggatttacctgcaaaggtgataggtgag |
27778548 |
T |
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| Q |
102 |
cattnnnnnnntcttgagcaattctataactttgattcaactcagcacacatatttgatgaactaagacaactctttattccatcccatttatgtgaact |
201 |
Q |
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| T |
27778547 |
cattaaagaaatcttgagcaattctataactttgattcaactcagcacacatatttgatgaactaagacaactctttattccatcccatttatgtgaact |
27778448 |
T |
|
| Q |
202 |
tctaacccttctacgaagccaaaatgaaaaatcatccacacgatattctaaatatgacctattaggttcaatattcccatgacctctaagtgtaaccgaa |
301 |
Q |
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| T |
27778447 |
tctaacccttctacgaagccaaaatgaaaaatcatccactcgatattctaaatatgacctattaggttcaatattcccatgacctctaagtgtaactgaa |
27778348 |
T |
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| Q |
302 |
tacacaaaaatcaccaaagaaaccaacaatacaatgagcataatcatagcaatgaggtagaatatgagaagcattgggattctccaaaaggctccaatga |
401 |
Q |
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| T |
27778347 |
tacacaaaaatcaccaaagaacccaacaatacaatgagcacaatcatagcaataaggtagaatatgagaagcattgggattctccaaaaggctccaatga |
27778248 |
T |
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| Q |
402 |
aaccaaccataccaacaattaaaattagtatccctaaaatgatcactggccattgtaagattttgacaca |
471 |
Q |
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| T |
27778247 |
aaccaaccataccaacaattaaaattagtatccctaaaatgatcactggccattgtaggattttgacaca |
27778178 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 406
Target Start/End: Complemental strand, 12639591 - 12639412
Alignment:
| Q |
227 |
gaaaaatcatccacacgatattctaaatatgacctattaggttcaatattcccatgacctctaagtgtaaccgaatacacaaaaatcaccaaagaaacca |
326 |
Q |
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||||||||||||| ||| ||||| ||||| | ||||||||||||||| | |||||||| | ||| |||||| || |||||||| |||||| |||| | |
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| T |
12639591 |
gaaaaatcatccaaacggtattccaaataagccctattaggttcaatcataccatgaccacgaagagtaaccatgtaaacaaaaataaccaaacaaacta |
12639492 |
T |
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| Q |
327 |
acaatacaatgagcataatcatagcaatgaggtagaatatgagaagcattgggattctccaaaaggctccaatgaaacca |
406 |
Q |
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| T |
12639491 |
gcaagataataagcacaagcatagcaactaggtagaatattaggagacatgagattctccaaaaggaaccaatgagacca |
12639412 |
T |
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