View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2095_low_3 (Length: 464)
Name: NF2095_low_3
Description: NF2095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2095_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 15 - 444
Target Start/End: Complemental strand, 16901912 - 16901483
Alignment:
| Q |
15 |
caaatttgaccttggaatttattgggaattgcaccataaacttcaacttgacaaatgcaatcacaaatttactcaactcaaagttgtagtggtgagaagt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
16901912 |
caaatttgaccttggaatttattgggaattgcaccataaacttcaacttgacaaatgcaatcacaaatttactcaactcaaagttgcagtgatgagaagt |
16901813 |
T |
|
| Q |
115 |
tttaagtttttggcttctgaacttgagctactaaagataattttgcaaagagcaacaatattggagatggtatttttaattctaccagagaatggatgtt |
214 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16901812 |
tttaagtttttaccttctgaacttgagctactaaagataattttgcaaagagcaacaatattggagatggtatttttaattctaccagagaatggatgtt |
16901713 |
T |
|
| Q |
215 |
gtgagttcagaacacaagacgtaccagaatatgcaaaacttattaattcttggaaagtatcaacaaaggccaaagtaaatgtatatgaaagttatcatga |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16901712 |
gtgagttcagaacacaagacgtaccagaatatgcaaaacttattaattcttggaaagcatcaacaaaggccaaagtacatgtatatgaaagttatcatga |
16901613 |
T |
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| Q |
315 |
tgagtgttttggtaatccaactcattcaaaacgttggatcttagacccattttagtagtttgtgtttcttctatagagttgtaatgttatgatgttataa |
414 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16901612 |
tgagtgtttcggtaatccaactcattcaaaacgttggatcttagacccattttagtagtatgtgtttcttctatagagttgtaatgttatgatgttataa |
16901513 |
T |
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| Q |
415 |
tggcaatgtgccaattttgctttatgttcc |
444 |
Q |
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| T |
16901512 |
tggcaatgtgccaattttgctttatgttcc |
16901483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 28840674 - 28840837
Alignment:
| Q |
18 |
atttgaccttggaatttattgggaattgcaccataaacttcaacttgacaaatgcaatcacaaatttactcaactcaaagttgtagtggtgagaagtttt |
117 |
Q |
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||||||||||||||| |||||| ||||| |||| | | || |||| |||| || ||||||||||||||||| ||||||||| | ||| | || |||||| |
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| T |
28840674 |
atttgaccttggaatgtattggaaattgaaccagcagcctctacttaacaactgtaatcacaaatttactcagctcaaagttctggtgataaggagtttt |
28840773 |
T |
|
| Q |
118 |
aagtttttggcttctgaacttgagctactaaagataattttgcaaagagcaacaatattggaga |
181 |
Q |
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|||||| | |||| ||||||||| | |||||||| ||||||||||||||||||| ||||||| |
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| T |
28840774 |
aagtttcttccttcagaacttgagttggtaaagatagttttgcaaagagcaacaattttggaga |
28840837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 32406252 - 32406393
Alignment:
| Q |
19 |
tttgaccttggaatttattgggaattgcaccataaacttcaacttgacaaatgcaatcacaaatttactcaactcaaagttgtagtggtgagaagtttta |
118 |
Q |
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||||||||||||| ||||| || ||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||| | |||||| |
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| T |
32406252 |
tttgaccttggaacacattggcaaatgcaccagaaacctcacattgacaattgcaatcacaaatttactcaactcaaagttgtagtgctgacaggtttta |
32406351 |
T |
|
| Q |
119 |
agtttttggcttctgaacttgagctactaaagataattttgc |
160 |
Q |
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||| | || ||||||| ||||| || |||||||| |||||| |
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| T |
32406352 |
agtatctgccttctgagcttgaattagtaaagatagttttgc |
32406393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 28954572 - 28954736
Alignment:
| Q |
17 |
aatttgaccttggaatttattgggaattgcaccataaacttcaacttgacaaatgcaatcacaaatttactcaactcaaagttgtagtggtgagaagttt |
116 |
Q |
| |
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|||||||||||| ||| |||||| ||||| | ||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||| | |||| ||| |
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| T |
28954572 |
aatttgaccttgcaatatattggcaattgtatcataaacatcacattgacaactgcaatcacagatttactcaactcaaagttgtagtaatcagaaattt |
28954671 |
T |
|
| Q |
117 |
taagtttttggcttctgaacttgagctactaaagataattttgcaaagagcaacaatattggaga |
181 |
Q |
| |
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| | | | || | |||||||| | || ||||| | ||||||||||||||||||| ||||||| |
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| T |
28954672 |
tgaatatatgtcagctgaacttcaattagtaaagcaagttttgcaaagagcaacaatcttggaga |
28954736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 35693928 - 35693777
Alignment:
| Q |
18 |
atttgaccttggaatttattgggaattgcaccataaacttcaacttgacaaatgcaatcacaaatttactcaactcaaagttgtagtggtgagaagtttt |
117 |
Q |
| |
|
|||| |||||||| | |||||| || ||||| |||||| |||||||||||| ||||| | ||||||||||||||||||||||| ||| ||||||||||| |
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| T |
35693928 |
atttaaccttggactgtattggcaaatgcacgataaacctcaacttgacaattgcaactataaatttactcaactcaaagttgtggtgctgagaagtttt |
35693829 |
T |
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| Q |
118 |
aagtttttggcttctgaacttgagctactaaagataattttgcaaagagcaa |
169 |
Q |
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|||| |||| |||| ||||||||| || |||||||| |||| || ||||||| |
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| T |
35693828 |
aagtatttgtcttcagaacttgagttagtaaagatacttttccatagagcaa |
35693777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 59 - 169
Target Start/End: Original strand, 35450010 - 35450120
Alignment:
| Q |
59 |
aacttgacaaatgcaatcacaaatttactcaactcaaagttgtagtggtgagaagttttaagtttttggcttctgaacttgagctactaaagataatttt |
158 |
Q |
| |
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||||||| || || ||||||||||||| ||||||||||||||||||| | |||| |||||||| | || |||||||||||||| | ||||||| |||| |
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| T |
35450010 |
aacttgataattgtaatcacaaatttattcaactcaaagttgtagtgttaagaaattttaagtgtctgccttctgaacttgagttggtaaagatggtttt |
35450109 |
T |
|
| Q |
159 |
gcaaagagcaa |
169 |
Q |
| |
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||||||||||| |
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| T |
35450110 |
gcaaagagcaa |
35450120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 3267199 - 3267261
Alignment:
| Q |
61 |
cttgacaaatgcaatcacaaatttactcaactcaaagttgtagtggtgagaagttttaagttt |
123 |
Q |
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|||||||| ||||||||||||||||| ||| ||||||||| |||| |||||||||| |||||| |
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| T |
3267199 |
cttgacaagtgcaatcacaaatttacacaattcaaagttgaagtgctgagaagtttaaagttt |
3267261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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