View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2095_low_4 (Length: 383)
Name: NF2095_low_4
Description: NF2095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2095_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 5 - 281
Target Start/End: Original strand, 45550487 - 45550763
Alignment:
| Q |
5 |
ctgcttcctttggcatagtgttgtgatgatgcagtactacaattaccagaaaccttcttctcaggaacgttgtccagtcccattagtttggctattacgt |
104 |
Q |
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| T |
45550487 |
ctgcttcctttggcagagtgtttggatgatgcagtattacaattaccagaaaccttcttctcaggaaggttgtccagtcccattagtttggctattacgt |
45550586 |
T |
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| Q |
105 |
ttggaatccttcccttgtcggccatctggtttgaaatgtcggcagctctgccagtgttagttgatgttcgcttccgctgagaatcttttatctttctggt |
204 |
Q |
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| T |
45550587 |
ttggaatccttcccttgtcggccatctggtttgaaatgtcggcagctctgccagtgttagttgatgttcgcttccgctgagaatcttttatctttttggt |
45550686 |
T |
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| Q |
205 |
ttccttagagttagtgattgtaattgctctctgcatcttgttgtcaaccgagaaagttggacgtgccagttgcattt |
281 |
Q |
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| T |
45550687 |
ttccttagagttggtgattgtaattgctctctgcatcttgttgtcaaccgagaaagttggacgtgccagttgtattt |
45550763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 45550814 - 45550846
Alignment:
| Q |
344 |
tctaatagtgtgattcgatttttgttctctgct |
376 |
Q |
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| T |
45550814 |
tctaatagtgtgattcgatttttgttctgtgct |
45550846 |
T |
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