View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2095_low_6 (Length: 300)
Name: NF2095_low_6
Description: NF2095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2095_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 29108566 - 29108285
Alignment:
| Q |
17 |
aaattgaaatccacaaggttgagcatatcagagttcagcttccttcggatatgagcgacagcggcattccatgctggtgcatcagctctgtgcagtccta |
116 |
Q |
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| T |
29108566 |
aaattgaaatccacaaggttgagcatatcagagttcagcttccttcggatatgagcgacagcggcattccatgctggtgcatcagctctgtgcagtccta |
29108467 |
T |
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| Q |
117 |
ctttcctttcctgccatattaacgccatgaatagctaatacaaaacacaatttcccaacaggtaataaaactattagaataacagccactcgtattaacc |
216 |
Q |
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| T |
29108466 |
ctttcctttcctgccatattaacgccatgaatagctaatacaaaacacaatttcccaacaggtaataaaactataagaataacagccactcgtattaacc |
29108367 |
T |
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| Q |
217 |
aaaatctttggttcaattctaatattaaggaaaaaaggtacctccaagggattttaaggattttatataacaacctatgatt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
29108366 |
aaaatctttggttcaattctaatattaaggaaaaaaggaacctccaagggatttgaaggattttatataacaacctctgatt |
29108285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 86 - 273
Target Start/End: Complemental strand, 29074967 - 29074776
Alignment:
| Q |
86 |
catgctggtgcatcagctctgtgcagtcctactttcctttcctgccatattaacgccatgaatagctaatacaaaacacaatttcccaacaggtaataaa |
185 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||| |
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| T |
29074967 |
catgctggtgcatcagctctgtgcagtcctattttcctttcctgccatattaacgccatgaatagctaatacaaagcaaaatttcccaacaggtattaaa |
29074868 |
T |
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| Q |
186 |
actattag---aataacagccactcgtattaaccaaaatctttggttcaattctaatatta-aggaaaaaaggtacctccaagggattttaa |
273 |
Q |
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| T |
29074867 |
actataagaataataacaaccactcgtattaaccaaaatctttggttcaattctaatattatagaagaaaaaaaacctccaagggattttaa |
29074776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 29075406 - 29075330
Alignment:
| Q |
17 |
aaattgaaatccacaaggttgagcatatcagagttcagcttccttcggatatgagcgacagcggcattccatgctgg |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29075406 |
aaattgaaatccacaaggttgagcatatcagagttcagcttccttcggatatgagcgacagcggcattccatgctgg |
29075330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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