View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2095_low_8 (Length: 241)
Name: NF2095_low_8
Description: NF2095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2095_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 34760714 - 34760506
Alignment:
| Q |
19 |
atgctcccatgaacttatttgagagcgtcatacaaagtcgtagacgaatttgatggtttactcggtagaaaactagtattactctaacatatagtataag |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34760714 |
atgctccgatgaacttatttgagagcgtcatacaaagtcgtagacgaatttggtggtttacccagtagaaaactagtattactctaacatatagtataag |
34760615 |
T |
|
| Q |
119 |
tattcatatttggtgtaccaaaatctaatacttctcaccctatctaatgttattattcttaagaacctatgggcgaaactctaagtaccgaaaagtgggg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
34760614 |
tattcatatttggtgtaccaaaatctaatacttctcaccctatctaatgttattattcttaagaacctatgggtgaaactctaagtaccgaaaagtaggg |
34760515 |
T |
|
| Q |
219 |
aatcacagg |
227 |
Q |
| |
|
||||||||| |
|
|
| T |
34760514 |
aatcacagg |
34760506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 206
Target Start/End: Complemental strand, 34748171 - 34748020
Alignment:
| Q |
60 |
agacgaatttgatggtttactcggtagaaaactagtattactctaacatatagtat-----aagtattcatatttggtgtaccaaaatctaatacttctc |
154 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||| ||||| || |
|
|
| T |
34748171 |
agacggatttggtggtttactcactagaaaactagtattactctaaaatatagtaataaaaaagtactcatatttggtgaaccaaaatcgaatacccttc |
34748072 |
T |
|
| Q |
155 |
accctatctaatgttattattcttaagaacctatgggcgaaactctaagtac |
206 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||| || |||||| |||||| |
|
|
| T |
34748071 |
accctatttaatactattattcttaagagcctatcggtcaaactccaagtac |
34748020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 595891 - 595923
Alignment:
| Q |
49 |
tacaaagtcgtagacgaatttgatggtttactc |
81 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
595891 |
tacaaagtcggagacgaatttgatggtttactc |
595923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University