View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20960_high_1 (Length: 514)
Name: NF20960_high_1
Description: NF20960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20960_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 4 - 489
Target Start/End: Complemental strand, 51121711 - 51121224
Alignment:
| Q |
4 |
atgtcgaataatatgtaatcaatattgattggtgtatattccaaagaaaaagaccaggtctagtacattacgtcacatgttgtaatcaaaatgtaatcta |
103 |
Q |
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| T |
51121711 |
atgtagaagaatatgtaatcaatattgattggtgtatattccaaagaaaaagaccaggtctagtacattacgtcacatgttgtaatcaaaatgtaatcta |
51121612 |
T |
|
| Q |
104 |
aaccat--gcatggaaaagaaaaagcggaaaatgatagaatgagacacaccattgtttggtagatttgatcttacgaaggaaaaatacttaagcagataa |
201 |
Q |
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| T |
51121611 |
aaccataagcatggaaaagaaaaggcggaaaattatagaatgagacacaccattgtttggtagatttgatcttacgtaggaaaaatgcttaagcagataa |
51121512 |
T |
|
| Q |
202 |
aagtaacagcagaaaaaagtgtgttacaattaacaagtatatatgcaatactcatgctgccaagtaatatagttcaaggcaaagctatgaaaagctatac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51121511 |
aagtaacagcagaaaaaagtgtgttacaattaacaagtatatatgcaatactcatgctgccaagtaatatagttcaaggcaaagctatgaaaagctatac |
51121412 |
T |
|
| Q |
302 |
aatgtaaggctgcatatataacacccttgcaatacnnnnnnnttggagtgtttattatcgcgcacaacctaatgagcatatccttttcttaaaagtaatt |
401 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51121411 |
aatgtaaggctgcatatataacacccttgcaatacaaaaaaattggagtgtttattatcgcgcacaacctaatgagcatatccttttcttaaaagtaatt |
51121312 |
T |
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| Q |
402 |
agagacgtaaatttgaaaacaaaaaacatcttacatttcaaaagttcaaacttccacagagcagcctcagaatgctagcaaacaagac |
489 |
Q |
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| T |
51121311 |
agagacgtaaatttgaaaacaaaaaacatcttacatttcaaaagttcaaacttccacagagcagcctcagaatgctagcaaacaagac |
51121224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 408 - 487
Target Start/End: Complemental strand, 45245493 - 45245415
Alignment:
| Q |
408 |
gtaaatttgaaaacaaaaaacatcttacatttcaaaagttcaaacttccacagagcagcctcagaatgctagcaaacaag |
487 |
Q |
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||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
45245493 |
gtaaattcgaaaacaaaaaacatcttacacttc-aaagttcaaacttaagtagagcagtttcagaatgctagcaaacaag |
45245415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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