View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20960_high_5 (Length: 247)

Name: NF20960_high_5
Description: NF20960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20960_high_5
NF20960_high_5
[»] chr8 (2 HSPs)
chr8 (112-247)||(33571484-33571619)
chr8 (12-82)||(33571388-33571458)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 112 - 247
Target Start/End: Original strand, 33571484 - 33571619
Alignment:
Q  112 cttcaataatatatacaagttgattaaataatcaaggaacatattttcttccaaaactacccctactccggaatagcactcaacgccgccataaacttcc 211  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33571484 cttcaataatatatacaagttgattaagtaatcaaggaacatattttcttccaaaactacccctactccggaatagcactcaacgccgccataaacttcc 33571583  T
Q  212 ccctaccaccagcaccaccaccataatttcttctcc 247  Q
    | ||||||||| ||||||||||||||||||| ||||    
T  33571584 ctctaccaccatcaccaccaccataatttctcctcc 33571619  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 33571388 - 33571458
Alignment:
Q  12 agagaggatctgattaagctaatctaatttcttctatagttaaacaaaaatctctacaatgtacaaaactt 82  Q
    |||||| |||| | ||||||||| ||||||||||||| || ||| ||| ||||||||||||||||||||||    
T  33571388 agagagaatctaactaagctaatataatttcttctattgtcaaaaaaagatctctacaatgtacaaaactt 33571458  T

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