View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20960_low_7 (Length: 237)
Name: NF20960_low_7
Description: NF20960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20960_low_7 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 41013968 - 41013747
Alignment:
| Q |
16 |
aaattatgtctctttagttcaattgatagcttcggtttcactacaaatgcttaaataagctggtcttttggcagataacaaacacgttgaaagaaccaga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41013968 |
aaattatgtctctttagttcaattgatagcttcggtttcacaacaaatgcttaaataagctggtcttttggcagataacaaacacgttgaaagaaccgga |
41013869 |
T |
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| Q |
116 |
aattgctttcacaggagacaccatgtcagattttataattgatgaaaataacaccgacgtcttgcgggctaaagttcttgtattggaggtaatccacttt |
215 |
Q |
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| T |
41013868 |
aattgctttcacaggagacaccatgtcagattttataattgatgaaaataacaccgacgtcttgcgggctaaagttcttgtattggaggtaatccacttt |
41013769 |
T |
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| Q |
216 |
gtccaatactttagaagaaacc |
237 |
Q |
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| T |
41013768 |
gtccaatactttagaagaaacc |
41013747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 12112932 - 12112711
Alignment:
| Q |
16 |
aaattatgtctctttagttcaattgatagcttcggtttcactacaaatgcttaaataagctggtcttttggcagataacaaacacgttgaaagaaccaga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
12112932 |
aaattatgtctctttagttcaattgatagcttcggtttcactacaaatgcttaaataagctggtcttttggcagataacaaacacgttgaaagagccgga |
12112833 |
T |
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| Q |
116 |
aattgctttcacaggagacaccatgtcagattttataattgatgaaaataacaccgacgtcttgcgggctaaagttcttgtattggaggtaatccacttt |
215 |
Q |
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| T |
12112832 |
aattgctttcacaggagacaccatgtcagattttataattgatgaaaataacactgatgtcttgcgggctaaagttcttgtattggaggtaatccacttc |
12112733 |
T |
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| Q |
216 |
gtccaatactttagaagaaacc |
237 |
Q |
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||||||||||| |||||||||| |
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| T |
12112732 |
gtccaatacttaagaagaaacc |
12112711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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