View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20961_high_2 (Length: 448)
Name: NF20961_high_2
Description: NF20961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20961_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 31974187 - 31973763
Alignment:
| Q |
18 |
caattaccactgggattcggaaaattatactatcaagatatacaggaagatctcaacatgattgatgctgaatataattatatatagattgcacttacat |
117 |
Q |
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| T |
31974187 |
caattaccactgggattcggaaaattatactatcaagatatacaggaagatctcaacatgattgatgctgaatatagttatatatagattacacttacat |
31974088 |
T |
|
| Q |
118 |
ggtgtcttttcaaactaa-ttaactttgttcaacttgattttctccaactgtcgtagaatttgagttggaagtatgtcc-ttatacaattgatttgtaaa |
215 |
Q |
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| T |
31974087 |
ggtgtcttttcaaactaaattaactttgttcaacttggttttctccaactgtcatagaatttgagttggaagtatgtcagttataaaattgatttgtaaa |
31973988 |
T |
|
| Q |
216 |
atgagggatgtctttctttataatctttagtcaaactttatcttagaatttggattaaacttaaatattcaacataagaaaatcaatttgtaagatgaaa |
315 |
Q |
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| T |
31973987 |
atgagggatgtctttctttataatatctaatcaaactttatcttaaaatttggattaaacttaaatattcatcataagaaaatcgatttgtaagatgaaa |
31973888 |
T |
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| Q |
316 |
aatgcttctatttataaaccctggttatgtcttatctttaaactttgtgagacttgatttttccaatacaacgtaaatttgtaactaagacttctgttgg |
415 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31973887 |
aatgcttctatttataaaccttggttatgtcttatctttaaactttgtgagacttgatttttccaatacaacgtaaatttgtaactaagatttctgttgg |
31973788 |
T |
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| Q |
416 |
aaatcaagtgtgcgtgatgatgtcc |
440 |
Q |
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| T |
31973787 |
aaatcaagtgtgcgtgattatgtcc |
31973763 |
T |
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