View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20961_low_3 (Length: 348)
Name: NF20961_low_3
Description: NF20961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20961_low_3 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 29936955 - 29936620
Alignment:
| Q |
13 |
gagagaattgtacaagaggcattggaaagaataatgataaaccggacgacaatcgtcgtagctcaccgcttaagtacaatcagaaatgttgataccattg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29936955 |
gagagaattgtacaagaggcattggaaagaataatgataaaccggacgacaatcgtcgtagctcaccgcttaagtacaatcagaaatgttgataccattg |
29936856 |
T |
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| Q |
113 |
ctgtcattcgtcaaggaaaaatagttgaacgaggtagaaacattattttgtgacaataatcctgtttctccatgactcaaaattaatagaaatcatgaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29936855 |
ctgtcattcgtcaaggaaaaatagttgaacgaggtagaaacattattttgtgacaataatcctgtttctccatgactcaaaattaatagaaatcatgaag |
29936756 |
T |
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| Q |
213 |
cccaaatgtttttgtacataatagcattcttatatttttcaattggttaggttcacatgtcgagctcaccaaggatgctaatggtgcctatagccagctt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29936755 |
cccaaatgtttttgtacataatagcattcttatatttttcaattggttaggttcacatgtcgagctcaccaaggatgctaatggtgcctatagccagcta |
29936656 |
T |
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| Q |
313 |
attagactgcaagaaatgaaggggtcagaacaaaat |
348 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
29936655 |
attagactgcaagaaatgaaggggtcagaacaaaat |
29936620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 13 - 344
Target Start/End: Original strand, 51157217 - 51157546
Alignment:
| Q |
13 |
gagagaattgtacaagaggcattggaaagaataatgataaaccggacgacaatcgtcgtagctcaccgcttaagtacaatcagaaatgttgataccattg |
112 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
51157217 |
gagagaattgtacaagaggcattggagagaataatgataaaccggacaactatcgttgtagctcaccgcttaagtacaataagaaatgttgaaaccattg |
51157316 |
T |
|
| Q |
113 |
ctgtcattcgtcaaggaaaaatagttgaacgaggtagaaacattattttgtgacaataatcctgtttctccatgactcaaaattaatagaaatcatgaag |
212 |
Q |
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||||||||| ||| ||||||||||||||| |||||| | | |||||||||| |||| |||| ||||||||||| ||||||| || ||| ||||| | |
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| T |
51157317 |
ctgtcattcatcatggaaaaatagttgaaagaggtacacagattattttgtaacaa-aatctaacttctccatgacacaaaatt-gtataaagcatgatg |
51157414 |
T |
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| Q |
213 |
cccaaatgtttttgtacataatagcattcttatatttttcaattggttaggttcacatgtcgagctcaccaaggatgctaatggtgcctatagccagctt |
312 |
Q |
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| |||||||| | ||| || |||||||||||||||||| ||||||||||||||||||| ||||||||| ||| || ||||||| ||||||||||| ||| |
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| T |
51157415 |
cacaaatgttaatatacttagtagcattcttatattttttaattggttaggttcacatgccgagctcacaaagtatcctaatggagcctatagccaactt |
51157514 |
T |
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| Q |
313 |
attagactgcaagaaatgaaggggtcagaaca |
344 |
Q |
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||||||||||||||||||||||| |||||||| |
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| T |
51157515 |
attagactgcaagaaatgaagggttcagaaca |
51157546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 51146095 - 51146411
Alignment:
| Q |
13 |
gagagaattgtacaagaggcattggaaagaataatgataaaccggacgacaatcgtcgtagctcaccgcttaagtacaatcagaaatgttgataccattg |
112 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||| |||||||| || || || |||||||||||||| |||| |
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| T |
51146095 |
gagagaattgtacaagaggcattgaacagaataatgataaaccggacgactatcgttgtagcacaccgcttgagcactataagaaatgttgatacaattg |
51146194 |
T |
|
| Q |
113 |
ctgtcattcgtcaaggaaaaatagttgaacgaggtagaaacattattttgtgacaataatcctgtttctccatgactcaaaattaatagaaatcatgaag |
212 |
Q |
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||||||||| ||||||||||||||||||| |||||||| || ||| |||||||| || |||||||| ||| ||| ||||||| |
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| T |
51146195 |
ctgtcattcatcaaggaaaaatagttgaaagaggtagacacgtta-------------------tttctccacgattcaaaattcataaaaagcatgaag |
51146275 |
T |
|
| Q |
213 |
cccaaatgtttttgtacataatagcattcttatatttttcaattggttaggttcacatgtcgagctcaccaaggatgctaatggtgcctatagccagctt |
312 |
Q |
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||||||||||| | || | || |||||||||||||||||||||| | ||||||||||| ||||||||||| ||| | ||||| |||||||| |||||| |
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| T |
51146276 |
cccaaatgtttatatattttattgcattcttatatttttcaattgataaggttcacatgctgagctcaccaatgatcccaatggagcctatagtcagctt |
51146375 |
T |
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| Q |
313 |
attagactgcaagaaatgaaggggtcagaacaaaat |
348 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||| |
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| T |
51146376 |
attagactgcaagaaatgaagaggtcagagcaaaat |
51146411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 51200031 - 51200166
Alignment:
| Q |
13 |
gagagaattgtacaagaggcattggaaagaataatgataaaccggacgacaatcgtcgtagctcaccgcttaagtacaatcagaaatgttgataccattg |
112 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||| ||||||| || || | | ||||||||||| || |||||||| | |||| ||||||||||| |
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| T |
51200031 |
gagagaattgtacaagaggcattggatagagtaatggtaaaccgaacaactgtgattgtagctcaccgtttgagtacaataaagaatgctgataccattg |
51200130 |
T |
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| Q |
113 |
ctgtcattcgtcaaggaaaaatagttgaacgaggta |
148 |
Q |
| |
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| T |
51200131 |
ccgttattcatcaaggaaaaataattgaaagaggta |
51200166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 236 - 344
Target Start/End: Original strand, 51200224 - 51200331
Alignment:
| Q |
236 |
gcattcttatatttttcaattggttaggttcacatgtcgagctcaccaaggatgctaatggtgcctatagccagcttattagactgcaagaaatgaaggg |
335 |
Q |
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||||||||||||||| |||||| | ||||||||||| ||||||| | |||| || |||| |||||||| ||||||||||| ||||||||||||| ||| |
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| T |
51200224 |
gcattcttatatttt-caattgatcaggttcacatgctcagctcacaagggatcctgatggagcctataggcagcttattaggctgcaagaaatgagggg |
51200322 |
T |
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| Q |
336 |
gtcagaaca |
344 |
Q |
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||||||||| |
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| T |
51200323 |
gtcagaaca |
51200331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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