View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20961_low_4 (Length: 306)
Name: NF20961_low_4
Description: NF20961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20961_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 15996782 - 15997044
Alignment:
| Q |
1 |
gcactgccaccaaaatataacaggcagacgtgttgcaatacttgtgattgttcagcgttttctgtttctctactgctgattgccccatcacatgcatgaa |
100 |
Q |
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||||| ||| |||||||| ||||||||| || |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| |
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| T |
15996782 |
gcactaccatcaaaatatgacaggcagatgtactgcaatacttgtgattgttcagcgctttctgtttctcttgtgctgattgccccatcacatgcgtgaa |
15996881 |
T |
|
| Q |
101 |
taatattaatgacattgctgaaactattcgtggttcaccgatctcagtataactttattcagagcataaaactctagacctaaagttgatgagaaatttt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15996882 |
taatattaatgacattgctaaaactattcgtggttcaccgatctcagtataactttattcagagcataaaactctagacctaaagttgatgagaaatttt |
15996981 |
T |
|
| Q |
201 |
ctgattcattacgccagcttaagcatcttgaaattcttgatctcagtaacaatacctttacca |
263 |
Q |
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| T |
15996982 |
cagattcattacgccagcttaagcatcttgaaattcttgatctcagtaacaatacctctacca |
15997044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 15997106 - 15997065
Alignment:
| Q |
265 |
gttgtctttgtcctataattcatcacctttgggatgcaagac |
306 |
Q |
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| T |
15997106 |
gttgtctttgtcctataattcatcacctttgggatgcaagac |
15997065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 14676367 - 14676320
Alignment:
| Q |
205 |
ttcattacgccagcttaagcatcttgaaattcttgatctcagtaacaa |
252 |
Q |
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| T |
14676367 |
ttcattaggccagcttaagcatcttgaatttcttggcctcagtaacaa |
14676320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 14683485 - 14683438
Alignment:
| Q |
205 |
ttcattacgccagcttaagcatcttgaaattcttgatctcagtaacaa |
252 |
Q |
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||||||| |||||||||||||||||||| |||||| ||||||||||| |
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| T |
14683485 |
ttcattaggccagcttaagcatcttgaatttcttggcctcagtaacaa |
14683438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 4497027 - 4497082
Alignment:
| Q |
201 |
ctgattcattacgccagcttaagcatcttgaaattcttgatctcagtaacaatacc |
256 |
Q |
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||||||||||| ||| ||||||||||||||| |||| ||||| |||||||||||| |
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| T |
4497027 |
ctgattcattagaccaacttaagcatcttgaagttctagatcttagtaacaatacc |
4497082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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