View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20961_low_5 (Length: 212)
Name: NF20961_low_5
Description: NF20961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20961_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 47 - 202
Target Start/End: Original strand, 15997110 - 15997265
Alignment:
| Q |
47 |
ccgtaataagttgttaggagctaaatttcctcctgtaacgtccatgcaatctactatttgcattttgatctagtcaagaaaccatgtgtctagaaagtta |
146 |
Q |
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| T |
15997110 |
ccgtaataagttgttaggagctaaatttcctcctgtaacatccatgcaatctactatttgcattttgatctagtcaagaaaccatgtgtctagaaagtta |
15997209 |
T |
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| Q |
147 |
ccaaaagtcgaagcatggaattgttagaatccgatgaaagtaagcatacctctctg |
202 |
Q |
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| T |
15997210 |
ccaaaagtcgaagcatggaattgttagaatccgatgaaagtaagcatacctctctg |
15997265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 14653686 - 14653742
Alignment:
| Q |
25 |
tggtgagaatgattgacctttcccgtaataagttgttaggagctaaatttcctcctg |
81 |
Q |
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| T |
14653686 |
tggtaagaatgattgacctttcatgtaataagctgtttggagataaattttctcctg |
14653742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 14663477 - 14663533
Alignment:
| Q |
25 |
tggtgagaatgattgacctttcccgtaataagttgttaggagctaaatttcctcctg |
81 |
Q |
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| T |
14663477 |
tggtaagaatgattgacctttcatgtaataagctgtttggagataaattttctcctg |
14663533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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