View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20962_high_14 (Length: 349)
Name: NF20962_high_14
Description: NF20962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20962_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 882973 - 883254
Alignment:
| Q |
19 |
gatagttggtcacacacaaatgcatctagtgcgttatttattactattatagtttcatggtacaccaaagtaactaggaggagtcttcgatgctagcaaa |
118 |
Q |
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| T |
882973 |
gatagttggtcacacacaaatgcatctagtgcgttatttattactattatagtttcatggtacaccaaagtaactaggaggagtcttcgatgctagcaaa |
883072 |
T |
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| Q |
119 |
tacctccaattcattccctgcatatacaattaaaattaggggatcatcccataatttcagtaaattatagtacaaaaattactaattaattagtcttgat |
218 |
Q |
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| T |
883073 |
tacctccaattcattccctgcatatactattaaaattaggggatcatcccataatttcagtaaattatagtacaaaaattactaattaattagtcttgat |
883172 |
T |
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| Q |
219 |
taccatcagggtcatagaagaaaactcgtttgatgttgccattagtagtctcaaaagtctcaatacccttgttctgtaaatg |
300 |
Q |
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| T |
883173 |
taccatcagggtcatagaagaaaactcgtttgatgttgccattagtagtctcaaaagtctcaatacccttgtcctgtaaatg |
883254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 880561 - 880606
Alignment:
| Q |
218 |
ttaccatcagggtcatagaagaaaactcgtttgatgttgccattag |
263 |
Q |
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| T |
880561 |
ttaccatcagggtcaaaaaagaaaacttgtttgattttgccattag |
880606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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