View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20962_high_17 (Length: 302)
Name: NF20962_high_17
Description: NF20962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20962_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 34317531 - 34317807
Alignment:
| Q |
9 |
agcagagatggtatcaaagtgctaaatcgaatctctgaggacatatgcttgaatggtaagccaaagaaaatgatgtagaagaaatcaagaaactat-ata |
107 |
Q |
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| T |
34317531 |
agcagagatggtatcaaagtgctaaatcgaatctctgaggacatatgcttgaatggtaagccaaagaaaatgatgtagaagaaatcaagaaactattata |
34317630 |
T |
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| Q |
108 |
actggcaaaaatagtaaacgtgttttagtgtaacatatacgtgtttcttaaactgggttggtgtggatttctaaaaatcaaatttgtttgctaagaaaat |
207 |
Q |
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| T |
34317631 |
actggcaaaaatagtatacgtgttttagtggaacatatacgtgtttcttaaactgggttggtgtggatttctaaaaatcaaatttgtttggtaagaaaat |
34317730 |
T |
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| Q |
208 |
atataaagaagaaaagtccaacaattgtttgtagtatactaggaaaatatttaaaattacgttagcaagatttattt |
284 |
Q |
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| T |
34317731 |
atataaagaagaaaagtccaacaattgtttgtagtatactaggaaaatatttaaaattacgttagcaagatttattt |
34317807 |
T |
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