View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20962_low_1 (Length: 849)

Name: NF20962_low_1
Description: NF20962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20962_low_1
NF20962_low_1
[»] chr1 (3 HSPs)
chr1 (18-834)||(28843414-28844220)
chr1 (199-245)||(42180144-42180190)
chr1 (730-759)||(30602335-30602364)
[»] chr3 (3 HSPs)
chr3 (733-823)||(22312204-22312295)
chr3 (199-238)||(8156217-8156256)
chr3 (199-245)||(29067288-29067334)
[»] chr4 (3 HSPs)
chr4 (792-834)||(34542407-34542449)
chr4 (725-759)||(25050079-25050113)
chr4 (200-245)||(46664436-46664481)
[»] scaffold0115 (1 HSPs)
scaffold0115 (199-239)||(35144-35184)
[»] chr2 (1 HSPs)
chr2 (189-245)||(1404777-1404833)
[»] chr7 (3 HSPs)
chr7 (199-245)||(21846504-21846550)
chr7 (199-245)||(27221422-27221468)
chr7 (778-823)||(31260835-31260880)
[»] chr6 (2 HSPs)
chr6 (199-245)||(7918460-7918506)
chr6 (199-245)||(17543819-17543865)
[»] chr5 (2 HSPs)
chr5 (199-245)||(19042468-19042514)
chr5 (199-245)||(43234872-43234918)


Alignment Details
Target: chr1 (Bit Score: 684; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 18 - 834
Target Start/End: Complemental strand, 28844220 - 28843414
Alignment:
Q  18 ataatctaccacttacttagaattcaacccaaagactacattatccactctggagaccacaaatccattttaaagcagttaa-gaacccacatgcatatg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28844220 ataatctaccacttacttagaattcaacccaaagactacattatccactctggagaccacaaatccattttaaagcagttaaagaacccacatgcatatg 28844121  T
Q  117 catccctctcatctattgatcaaagcggagatatacatactatacaatttgagcaagcacaaaacaacattgataatcatctttgtcaaaatctcaactt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  28844120 catccctctcatctattgatcaaagcggagatatacatactatacaatttgagcaagcacaaaacaacattgataatcatctttgtcagaatcttaactt 28844021  T
Q  217 aaattctaaaattcagaattttgtgacttgactcgtgcacgttatgacatctctctttaaacttaaaggttacaaattaatcatcacccctttgagccaa 316  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28844020 aaattctaaaatttagaattttgtgacttgactcgtgcacgttatgacctctctctttaagcttaaaggttacaaattaatcatcacccctttgagccaa 28843921  T
Q  317 ttttcaatgtccaacatatccaaccatgttgagcaataaccatgttctcttctgacgtgtttctctaaactttgacatttgtactacttcataccataaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  28843920 ttttcaatgtccaacatatccaaccatgttgagcaataaccatgttctcttctgacgtgttcctctaaactttgacatttgtactactccataccataaa 28843821  T
Q  417 atagtattaatagccatcattgatctttattcctcgttctaaattttgtagctacaaagaaataatctataaaaacttgctgaacagagggaacaatcag 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28843820 atagtattaatagccatcattgatctttattcctcgttctaaattttgtagttacaaagaaataatctataaaaacttgctgaacagagggaacaatcag 28843721  T
Q  517 ctttaaagcatgctaaagatcaactttctcataacaattgacacttattgaacaatgaactgattgggggcatgttattttcctcattcctcatcttgat 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       |||| |||||||||    
T  28843720 ctttaaagcatgctaaagatcaactttctcataacaattgacacttattgaacaatgaactgattgggtgcatgttatt-------ttccacatcttgat 28843628  T
Q  617 cacaacatatgcaacctgtatgacaaaaaacgaccaatcggccatatgttcaaaatcaaagaggtgaacatgcacaactttgtttattgcttcacaatgg 716  Q
    |||||||||||||||||||||||||||||||||      ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  28843627 cacaacatatgcaacctgtatgacaaaaaacga------ggccatatgttcaaaatcacagaggtgaacatgcacaactttgtttattgcttcacgatgg 28843534  T
Q  717 aacaaaggtgaaattgttgaagttggttttgaagttgtttgtaattcg--tttagtttcacaatgctcaagttttcggaccgttgagtgtataaatatgc 814  Q
    ||||||||||||||||||||||||| ||||||||||||||||| || |  ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  28843533 aacaaaggtgaaattgttgaagttgattttgaagttgtttgtagtttgtttttagtttcacatcgctcaagttttcggaccgttgagtgtataaatatgc 28843434  T
Q  815 ttgagtatcattatcctttg 834  Q
    ||||||||||||||||||||    
T  28843433 ttgagtatcattatcctttg 28843414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 42180190 - 42180144
Alignment:
Q  199 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 245  Q
    ||||||||||| |||||||||||||||||||||| |||||| |||||    
T  42180190 ttgtcaaaatcccaacttaaattctaaaattcaggattttgcgactt 42180144  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 730 - 759
Target Start/End: Original strand, 30602335 - 30602364
Alignment:
Q  730 ttgttgaagttggttttgaagttgtttgta 759  Q
    ||||||||||||||||||||||||||||||    
T  30602335 ttgttgaagttggttttgaagttgtttgta 30602364  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 733 - 823
Target Start/End: Original strand, 22312204 - 22312295
Alignment:
Q  733 ttgaagttggttttgaagttgtttgtaattcgt--ttagtttcacaatgctcaagttttcggaccgttgagtgtataaatatgcttgagtatc 823  Q
    ||||||||||||||||||||||||||| || ||  ||||| ||||||||||| |||||   ||| ||||||| |||||||||| |||||||||    
T  22312204 ttgaagttggttttgaagttgtttgtagtttgttattagtctcacaatgctc-agtttcttgactgttgagtatataaatatgtttgagtatc 22312295  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 8156256 - 8156217
Alignment:
Q  199 ttgtcaaaatctcaacttaaattctaaaattcagaatttt 238  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  8156256 ttgtcaaaatcccaacttaaattctaaaattcagaatttt 8156217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 29067288 - 29067334
Alignment:
Q  199 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 245  Q
    ||||||||||| | |||||||||||||||||||| |||||| |||||    
T  29067288 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactt 29067334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 792 - 834
Target Start/End: Complemental strand, 34542449 - 34542407
Alignment:
Q  792 gaccgttgagtgtataaatatgcttgagtatcattatcctttg 834  Q
    |||||||||||||||||||||| ||||||||||| ||||||||    
T  34542449 gaccgttgagtgtataaatatgtttgagtatcatcatcctttg 34542407  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 725 - 759
Target Start/End: Original strand, 25050079 - 25050113
Alignment:
Q  725 tgaaattgttgaagttggttttgaagttgtttgta 759  Q
    |||| ||||||||||||||||||||||||||||||    
T  25050079 tgaatttgttgaagttggttttgaagttgtttgta 25050113  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 46664481 - 46664436
Alignment:
Q  200 tgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 245  Q
    ||||||||| |||||||||||  ||||||||||||||||| |||||    
T  46664481 tgtcaaaatttcaacttaaatcttaaaattcagaattttgcgactt 46664436  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 35184 - 35144
Alignment:
Q  199 ttgtcaaaatctcaacttaaattctaaaattcagaattttg 239  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  35184 ttgtcaaaatctcgacttaaattctaaaattcataattttg 35144  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 1404777 - 1404833
Alignment:
Q  189 ataatcatctttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 245  Q
    ||||||||  ||||||||||| | ||||||||||||||||| || ||||||||||||    
T  1404777 ataatcattgttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactt 1404833  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 21846550 - 21846504
Alignment:
Q  199 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 245  Q
    ||||||||||| | |||||||||||||||||||| |||||| |||||    
T  21846550 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactt 21846504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 27221422 - 27221468
Alignment:
Q  199 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 245  Q
    |||| |||||| |||||||||||||||||||||| |||||| |||||    
T  27221422 ttgttaaaatcccaacttaaattctaaaattcaggattttgcgactt 27221468  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 778 - 823
Target Start/End: Complemental strand, 31260880 - 31260835
Alignment:
Q  778 tgctcaagttttcggaccgttgagtgtataaatatgcttgagtatc 823  Q
    |||||||||| |||||||||||||| |||||||||| |||| ||||    
T  31260880 tgctcaagttctcggaccgttgagtttataaatatgtttgaatatc 31260835  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 7918506 - 7918460
Alignment:
Q  199 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 245  Q
    ||||||||||| | |||||||||||||||||||| |||||| |||||    
T  7918506 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactt 7918460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 17543865 - 17543819
Alignment:
Q  199 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 245  Q
    ||||||||||||| |||||||| ||||||||||| |||||| |||||    
T  17543865 ttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgactt 17543819  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 19042514 - 19042468
Alignment:
Q  199 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 245  Q
    ||||||||||| ||||||||||||||||||| |  ||||||||||||    
T  19042514 ttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactt 19042468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 43234872 - 43234918
Alignment:
Q  199 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 245  Q
    ||||||||||| |||||||||| ||||||||||| |||||| |||||    
T  43234872 ttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactt 43234918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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