View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20962_low_10 (Length: 408)
Name: NF20962_low_10
Description: NF20962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20962_low_10 |
 | |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 59061 - 59438
Alignment:
| Q |
20 |
gtactttctctcaggcggtgctaccaccttgatcttcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
59061 |
gtactttctctcaggcggtgctaccaccttgatcttcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatg |
59160 |
T |
|
| Q |
120 |
gttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
59161 |
gttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcag |
59260 |
T |
|
| Q |
220 |
cttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagcgccaatagtgatgacttgcccatcaggcaactcatagctctt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59261 |
cttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagcgccaatagtgatgacttgcccatcaggcaactcatagctctt |
59360 |
T |
|
| Q |
320 |
ctccactgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatgtaagccagcttttccttcat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
59361 |
ctccactgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatgtaagccagcttttccttcat |
59438 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 24 - 396
Target Start/End: Complemental strand, 8690128 - 8689756
Alignment:
| Q |
24 |
tttctctcaggcggtgctaccaccttgatcttcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttg |
123 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||| || || |||||||| |||||||||||||||||||||||||| || |||||||| | |
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|
| T |
8690128 |
tttctctcaggtggtgcaaccaccttgatcttcatgctacttggggccaaagcagaaatttccttgctcattctatcagcaatgcctgggaacatggtag |
8690029 |
T |
|
| Q |
124 |
tacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagcttc |
223 |
Q |
| |
|
| |||||||| || ||||||||||| |||| |||||||||||| |||||||| || ||||| ||||||||||| |||||||| ||||| ||||| ||||| |
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|
| T |
8690028 |
ttcctcctgaaagcacaatgttaccgtacaagtctttcctgatatcaacatcgcacttcatgatggagttgtatgtggtctcgtgaatgcctgctgcttc |
8689929 |
T |
|
| Q |
224 |
cattcccaccatggatggttggtataagacctctggacacctaaaacgctcagcgccaatagtgatgacttgcccatcaggcaactcatagctcttctcc |
323 |
Q |
| |
|
|||||| | ||| ||||||||| | | |||||||||||| || |||||||| | || || ||||| || || ||||||||||| || ||||||||||| |
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|
| T |
8689928 |
cattcctatcatagatggttggaacaggacctctggacatctgaaacgctcgtctccgatggtgatcacctgtccatcaggcaattcgtagctcttctcg |
8689829 |
T |
|
| Q |
324 |
actgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatgtaagccagcttttccttca |
396 |
Q |
| |
|
|| | ||||||||| ||| |||||| ||||||||||||||||||||||||||||| | |||||||| |||| |
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|
| T |
8689828 |
acggatgagctggtcctggctgtctccagctcttgctcatagtcaagggcaatgtatgaaagcttttctttca |
8689756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 37050242 - 37050544
Alignment:
| Q |
20 |
gtactttctctcaggcggtgctaccaccttgatcttcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatg |
119 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||| ||||||||||| || || ||||| | ||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
37050242 |
gtacttcctctctggtggtgctacaaccttgattttcatgctactaggagccaatgctgtaatctccttgctcattctatcagcaataccagggaacatt |
37050341 |
T |
|
| Q |
120 |
gttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcag |
219 |
Q |
| |
|
|||| ||| || | || ||||||||||| || || ||||| |||||||||||||| ||||| || ||||| | || |||||||| || || | || |
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|
| T |
37050342 |
gttgaaccaccactcaacacgatgttaccatagagatccttcctaatgtcaacatcacacttcatgatcgagttaaatgttgtctcatggataccaggag |
37050441 |
T |
|
| Q |
220 |
cttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagcgccaatagtgatgacttgcccatcaggcaactcatagctctt |
319 |
Q |
| |
|
|||||| || | ||||||||| ||| | || || ||||| || | || | ||||| || || ||||| || ||||||||||| | ||||||| |||| |
|
|
| T |
37050442 |
attccatccctatcatggatggctggaacaaaacttctgggcatcggaatctttcagcaccgatcgtgatcacctgcccatcaggtagctcataggtctt |
37050541 |
T |
|
| Q |
320 |
ctc |
322 |
Q |
| |
|
||| |
|
|
| T |
37050542 |
ctc |
37050544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 24 - 396
Target Start/End: Complemental strand, 41388707 - 41388335
Alignment:
| Q |
24 |
tttctctcaggcggtgctaccaccttgatcttcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttg |
123 |
Q |
| |
|
|||||||| || || || |||||||||||||||||||| ||||| || || || | ||| |||||||||||||| |||||||| ||||| ||||| || | |
|
|
| T |
41388707 |
tttctctcgggtggagcaaccaccttgatcttcatgctgcttggggccaacgcggtaatttccttgctcattctgtcagcaataccagggaacatagtag |
41388608 |
T |
|
| Q |
124 |
tacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagcttc |
223 |
Q |
| |
|
|||| || ||||||||||| ||||||||||| || ||||| ||||||||||| ||||| || |||||||| || ||||| |||||||| ||||||| |
|
|
| T |
41388607 |
taccaccactaaggacaatgtttccatacaggtcctttctgatatcaacatcacacttcatgattgagttgtatgtcgtctcgtgaattccaacagcttc |
41388508 |
T |
|
| Q |
224 |
cattcccaccatggatggttggtataagacctctggacacctaaaacgctcagcgccaatagtgatgacttgcccatcaggcaactcatagctcttctcc |
323 |
Q |
| |
|
|||||| |||||||| || ||| | | ||||| ||||| | ||||||||||| ||||||||||| | || |||||||| | ||||||||||||||| |
|
|
| T |
41388507 |
cattccaaccatggaaggctggaaaagaacctcaggacaacggaaacgctcagcaccaatagtgattatctgtccatcaggaagctcatagctcttctca |
41388408 |
T |
|
| Q |
324 |
actgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatgtaagccagcttttccttca |
396 |
Q |
| |
|
|| ||||| || || || || || || |||||||||||| | ||||||||||| |||| |||||||||||||| |
|
|
| T |
41388407 |
acagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttca |
41388335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 1261907 - 1262113
Alignment:
| Q |
20 |
gtactttctctcaggcggtgctaccaccttgatcttcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatg |
119 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||||| |||||||||||||| || | ||| || ||||||||||| | |||||||| |||||||||||| |
|
|
| T |
1261907 |
gtacttcctctcaggaggtgcaaccaccttgattttcatgctacttggagcaagagcactgatttccttgctcatacggtcagcaattccaggaaacatg |
1262006 |
T |
|
| Q |
120 |
gttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcag |
219 |
Q |
| |
|
|| | |||||| || ||||| || ||||| || || ||||| || ||||||||||| ||||| ||||||||||| || || ||||| ||||| | || |
|
|
| T |
1262007 |
gtagaacctccactaagcacaatatttccatatagatccttcctaatatcaacatcacacttcatgatggagttgtatgtagtttcatggattccagtag |
1262106 |
T |
|
| Q |
220 |
cttccat |
226 |
Q |
| |
|
||||||| |
|
|
| T |
1262107 |
cttccat |
1262113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 21 - 396
Target Start/End: Complemental strand, 68746 - 68371
Alignment:
| Q |
21 |
tactttctctcaggcggtgctaccaccttgatcttcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatgg |
120 |
Q |
| |
|
||||| ||||| || ||||| |||||||| || ||||||||||||||||| ||||| | |||||||||||||| |||||||||||||| || ||||| | |
|
|
| T |
68746 |
tacttcctctctggtggtgcaaccaccttaattttcatgctacttggtgccaatgctgtgatctccttgctcatcctatcagcaatgccggggaacatag |
68647 |
T |
|
| Q |
121 |
ttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcagc |
220 |
Q |
| |
|
| ||||| || | || ||||| ||||| || || || || || ||||||||||| ||||| || || ||||| || || ||||| || || | ||| |
|
|
| T |
68646 |
tcgtaccaccactcaatacgatgtttccatagagatcctttctaatatcaacatcacacttcatgattgaattgtatgttgtttcatgtataccaggagc |
68547 |
T |
|
| Q |
221 |
ttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagcgccaatagtgatgacttgcccatcaggcaactcatagctcttc |
320 |
Q |
| |
|
|||||| || | ||||||||| ||| | | || || ||||| | ||||| || || || || ||||| || || |||||||| ||||||||||||||| |
|
|
| T |
68546 |
ttccataccaatcatggatggctggaagagtacttcaggacaacggaaacgttcggcacctattgtgatcacctgtccatcaggtaactcatagctcttc |
68447 |
T |
|
| Q |
321 |
tccactgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatgtaagccagcttttccttca |
396 |
Q |
| |
|
|| || || ||||| ||||| || || |||| |||||| ||||| ||||| |||||||| | || |||||||||| |
|
|
| T |
68446 |
tcaacagctgagctcgtcttcgaggtttctaactcttgttcataatcaagagcaatgtaggatagtttttccttca |
68371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 43646928 - 43647212
Alignment:
| Q |
20 |
gtactttctctcaggcggtgctaccaccttgatcttcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatg |
119 |
Q |
| |
|
|||||||||||| || || || || ||||| ||||||||||| || || || | |||| |||||||||||||| | |||||||| ||||| ||||| |
|
|
| T |
43646928 |
gtactttctctctggtggagccacaaccttaatcttcatgctgctaggagccagggcagtgatctccttgctcatacggtcagcaataccagggaacata |
43647027 |
T |
|
| Q |
120 |
gttgtacctcctgataggacaatgttaccatacaggtctttcctgatgtcaacatcacatttcattatggagttgtaagtggtctcatgaattcctgcag |
219 |
Q |
| |
|
|||| ||| || || |||||||| || ||||| || || ||||| || |||||||| ||||| || |||||||| |||||||| |||||||| |||| |
|
|
| T |
43647028 |
gttgaaccaccactaagaacaatgttgccgtacagatcctttctgatatccacatcacacttcatgatagagttgtaggtggtctcgtgaattccagcag |
43647127 |
T |
|
| Q |
220 |
cttccattcccaccatggatggttggtataagacctctggacacctaaaacgctcagcgccaatagtgatgacttgcccatcagg |
304 |
Q |
| |
|
|||||||||| | ||| ||||||||| | | ||| ||||| || | || | |||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
43647128 |
cttccattccgatcattgatggttggaaaaggacttctgggcaacggaacctctcagctccaattgtgataacttgtccatcagg |
43647212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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