View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20962_low_13 (Length: 364)
Name: NF20962_low_13
Description: NF20962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20962_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 37836223 - 37835890
Alignment:
| Q |
16 |
caagcacagtatcgatggttgcgtaaagctgaaattcgtcgaattctcagtaattataacaactattgtattgcttcagaacctccatgtatgccttcaa |
115 |
Q |
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| T |
37836223 |
caagcacagtatcgatggttgcgtaaagctgaaattcgtcgaattctcagtaattataacaactatcgtattgcttcagaacctccatgtatgcctacaa |
37836124 |
T |
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| Q |
116 |
gtatggtagattctgattattctagttttgtataaatactttcattttccttcattcattaggacaaaaaatggtttattcatgagcttaatgtcttaat |
215 |
Q |
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| T |
37836123 |
gtatggtagattctgattattctagttttgaataaatactttcattttccttcattcattaggacaaaaaatggtttattcatgagcttaatgtc----t |
37836028 |
T |
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| Q |
216 |
tatcatgttttggtttacattaggtggttcacttttcctatataatcgaaaggtggtgaaacactttagaaatgatggtcataactggaggaagaataaa |
315 |
Q |
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| T |
37836027 |
tatcatgttttggtttacattaggtggttcacttttcctatataatcgaaaggtggtgaaacactttagaaatgatggtcataactggaggaagaataaa |
37835928 |
T |
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| Q |
316 |
gatggaaaaactctccaggaaagccatggaaagctcat |
353 |
Q |
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| T |
37835927 |
gatggaaaaactctccaggaaagccatggaaagctcat |
37835890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 37845508 - 37845417
Alignment:
| Q |
236 |
taggtggttcacttttcctatataatcgaaaggtggtgaaacactttagaaatgatggtcataactggaggaagaataaagatggaaaaact |
327 |
Q |
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| T |
37845508 |
taggtggttcacttttcttgtttgatcgaaaggcgacaagatactttagaaaggatggacataactggaggaagaaaaaagatggaaaaact |
37845417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 327
Target Start/End: Original strand, 1650872 - 1650962
Alignment:
| Q |
237 |
aggtggttcacttttcctatataatcgaaaggtggtgaaacactttagaaatgatggtcataactggaggaagaataaagatggaaaaact |
327 |
Q |
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| T |
1650872 |
aggtggttcactttttctttttgaccgaaaggttttgagatactttagaaaggacgggcataattggagaaagaaaaaagatggaaaaact |
1650962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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