View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20962_low_14 (Length: 360)
Name: NF20962_low_14
Description: NF20962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20962_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 35287817 - 35287996
Alignment:
| Q |
11 |
catcatcaccactcttttcacctccatttaacaatcctaaattccagctccatcgtcttccacacgccaatgcttttccaccacttcctattcgcaaacc |
110 |
Q |
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| T |
35287817 |
catcatcaccactcttttcacctccatttaacaatcctaaattccagctccatcgtcttccacacgccaatgcttttccaccacttcctattcgcaaacc |
35287916 |
T |
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| Q |
111 |
tggtatcccttaatcgaatatcaattgttgtttttgtaattactattaagtttaaatataattttagtcatgcaattataacg |
193 |
Q |
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| T |
35287917 |
tggtatcccttaatcgaatatcaa---ttgtttttgtaattattattaagtttaaatataattttagtcatgcaattataacg |
35287996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 205 - 346
Target Start/End: Original strand, 35288274 - 35288415
Alignment:
| Q |
205 |
gttttgtagggtctcaatgttacattcgagctattagtgatagagctgtagaatctacaatttctaagaaagaagaggagggagaacagtctcctaaaga |
304 |
Q |
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| T |
35288274 |
gttttgtagggtctcaatgttacattcgagctattagtgatagagctgtagaatctacaatttctaagaaagaagaggagggagaacagtctcctaaaga |
35288373 |
T |
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| Q |
305 |
ttggaagattaaaatgctatatgatggagattgtccattatg |
346 |
Q |
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| T |
35288374 |
ttggaagattaaaatgctatatgatggagattgtccattatg |
35288415 |
T |
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