View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20962_low_15 (Length: 356)
Name: NF20962_low_15
Description: NF20962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20962_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 38820751 - 38820423
Alignment:
| Q |
8 |
cgaagaatattaagcaatgatgtgggaaatgaatctaaatgacataactgaataataagacacgaatggccattgcatagattcaaggttgcacattcgg |
107 |
Q |
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| T |
38820751 |
cgaagaaaattaagcaatgatgtgggaaatgaatctaaatgacatagctgaataataagacacgaatgaccattgcatagattcaagattgcacattcgg |
38820652 |
T |
|
| Q |
108 |
tctcaaaattggtttcttcttctgatacnnnnnnnn-acacatcgacaactcgatatcaaacccgataaccttaggtcctttataattttcaggatgtaa |
206 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38820651 |
tctcaaaattggtttcttcttctgatactttattttcacacatcgacaactcgatatcaaacccgataaccttaggtcctttataattttcaggatgtaa |
38820552 |
T |
|
| Q |
207 |
gaaagaccatagaatgtcgtcgatcactttctgtttatttgttacagtggtctctataaggactccgttcagctgaaacttctccacgaaacccatgagt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38820551 |
gaaagaccatagaatgtcgtcgatcactttctgtttatttgttacagtggtctctataaggactccgttcagctgaaacttctccacgaaacccatgagt |
38820452 |
T |
|
| Q |
307 |
gttagttttagatgatagaatatgagtag |
335 |
Q |
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| T |
38820451 |
gttagttttagatgatagaatatgagtag |
38820423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 285
Target Start/End: Complemental strand, 38831148 - 38830868
Alignment:
| Q |
6 |
gtcgaagaatattaagcaatgatgtgggaaatgaatctaaatgacataactgaataataagacacgaatggccattgcatagattcaaggttgcacattc |
105 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| | |||||||| ||||| | || ||||||||||| |
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| T |
38831148 |
gtcgaagaaagttaagcaatgatgtgggaactgaatctaaatgacatagctgaataataagacacaactggccattacataggtgcagagttgcacattc |
38831049 |
T |
|
| Q |
106 |
ggtctcaaaattggtttcttcttctgata-cnnnnnnnnacacatcgacaactcgatatcaaacccgataaccttaggtcctttataattttcaggatgt |
204 |
Q |
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|| | | | ||||||| ||||||| | | |||| |||||||||| ||| |||||||| ||||| ||||| ||||||||| ||||| || |
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| T |
38831048 |
ggaattgtcgtagatttcttcctctgataccttattttcaaacattgacaactcgacatcgaacccgattacctttggtccattataatttgcaggacgt |
38830949 |
T |
|
| Q |
205 |
aagaaagaccatagaatgtcgtcgatcactttctgtttatttgttacagtggtctctataaggactccgttcagctgaaac |
285 |
Q |
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||||| |||||||| | || ||| | | ||| ||| || |||||||| ||||||| ||| | |||||||||||| ||||| |
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| T |
38830948 |
aagaaggaccatagtaggttgtcaacctcttgctgcttgtttgttacggtggtcttgatatgaactccgttcagcagaaac |
38830868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 28159395 - 28159286
Alignment:
| Q |
8 |
cgaagaatattaagcaatgatgtgggaaatgaatctaaatgacataactgaataataagacacgaatggccattgcatagattcaaggttgcacattcgg |
107 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| |||||||| |||||||||||||||| |||| ||| | ||||||| || |||||| |||||| |
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| T |
28159395 |
cgaagaaaattaagcaatgttgtgggaaatgaatcttaatgacatgactgaataataagacatgaataaccaatacatagatgcagagttgcatattcgg |
28159296 |
T |
|
| Q |
108 |
tctcaaaatt |
117 |
Q |
| |
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|||| ||||| |
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|
| T |
28159295 |
tctcgaaatt |
28159286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 16081975 - 16081874
Alignment:
| Q |
16 |
attaagcaatgatgtgggaaatgaatctaaatgacataactgaataataagacacgaatggccattgcatagattcaaggttgcacattcggtctcaaaa |
115 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| ||| ||| | ||||||| || |||||| |||||||||| ||| |
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| T |
16081975 |
attaagtaatgatgtgggaaatgaatcttaatgacataactgaataataagtcacaaataaccaatacatagatgcagagttgcatattcggtctcgaaa |
16081876 |
T |
|
| Q |
116 |
tt |
117 |
Q |
| |
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|| |
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|
| T |
16081875 |
tt |
16081874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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