View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20962_low_17 (Length: 341)
Name: NF20962_low_17
Description: NF20962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20962_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 9 - 323
Target Start/End: Complemental strand, 4093883 - 4093568
Alignment:
| Q |
9 |
gtgagatgaatgaatattctgggcaccaagttggtattactgatagcatctatcatataatttcaatttatcaagacagaatatttattcatggcaatgc |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4093883 |
gtgacatgaatgaatattctgggcaccaagttggtattactgatagcatctatcatataatttcaatttatcaagacagaatatttattcatggcaatgc |
4093784 |
T |
|
| Q |
109 |
cagattgtttttacttcatccataacctttccctagtcacaagagcagtacacagtagaagatttgtcac-aaaagtcttcactcacaaaaaagttctta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4093783 |
cagattgtttttacttcatccataacctttccctagtcacaagagcagtacacagtagaagatttgtcacaaaaagtcttcactcacaaaaaagttctta |
4093684 |
T |
|
| Q |
208 |
taaacttttgattaataataattaactaacaaaaattgtcacaaattcacaatgacacacaagtgccgtcacttttatttgtccttacacatatctaatc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4093683 |
taaacttttgattaataataattaactaacaaaaattgtcacaaattcacaatgacacacaagtgccgtcacttttatttgtccttacacatatctaatc |
4093584 |
T |
|
| Q |
308 |
gatgaaagacgtcctt |
323 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
4093583 |
gaagaaagacgtcctt |
4093568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 49541175 - 49541231
Alignment:
| Q |
9 |
gtgagatgaatgaatattctgggcaccaagttggtattactgatagcatctatcata |
65 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| ||| ||||||| |||||||||||| |
|
|
| T |
49541175 |
gtgacatgaatgaatattctgggcacctagttagtaatactgatggcatctatcata |
49541231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University