View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20962_low_21 (Length: 272)
Name: NF20962_low_21
Description: NF20962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20962_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 24269752 - 24269487
Alignment:
| Q |
15 |
gagaagcattaggaagatgaaggggtgtttttatagttgtacttttt-gtttacgatcagggaatagggtagctcatgaattagccaatacacttttatt |
113 |
Q |
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| T |
24269752 |
gagaagcattaggaagatgaagaggtgtttttatagttgtacttttttgtttacgatcagggaatagggtagctcatgaattagccaatacacttttatt |
24269653 |
T |
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| Q |
114 |
aagcgcaattcaatatggatcgagagatccttgaggatttggcctatctgtgtaac--------gttgatttaatataatctcttttgttt---acnnnn |
202 |
Q |
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| T |
24269652 |
aagcgcaattcaatatggatcgagagatccttgaggatttggcctatctgtgtaacgctgatttgttgatttaatataatctcttttgtttataaaaaaa |
24269553 |
T |
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| Q |
203 |
nnnnncaccaatataagtgcatcatatgacgatctattatgctacacacaatatacattaaaaact |
268 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24269552 |
aaaaacaccaatatatgtgcatcatatgacgatctattatgctacacacaatatacattaaaaact |
24269487 |
T |
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