View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20962_low_5 (Length: 668)
Name: NF20962_low_5
Description: NF20962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20962_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 211 - 651
Target Start/End: Original strand, 21434776 - 21435229
Alignment:
| Q |
211 |
aggagatcttgtcgatcgagatgtgaggcaggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgtatttttgttgatggaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21434776 |
aggagatcttgtcgatcgagatgtgaggcaggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgtatttttgttgacggaaa |
21434875 |
T |
|
| Q |
311 |
tataagttaacttgtcatcctagtttgatattctgataatgttatgtcattctttcaatcaattcatgatttccaggttttgtcatcacttcgaggtgaa |
410 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21434876 |
tatcagttaacttgtcatcctagtttgatattctgataatgttatgtcattctttcaatcaattcatgatttccaggttttgtcatcacttcgaggtgaa |
21434975 |
T |
|
| Q |
411 |
gtcctaagcggatgtataatcgtttt-------------aatggtcatgacttacgaaaactcaggaggatagcagagcggttaggagctacttgtttga |
497 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21434976 |
gtcctaagcggatgtataatcgttttcagttgtgcttttaatggtcatgacttacgaaaactcaggaggatagcagagcggttaggagctacttgtttga |
21435075 |
T |
|
| Q |
498 |
cagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccatgtgggcagagaaagaaaataagtttttggttaatcgtcg |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21435076 |
cagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccatgtgggcagagaaagaaaataagtttttggttaatcgtcg |
21435175 |
T |
|
| Q |
598 |
atggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaactacat |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21435176 |
atggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaactacat |
21435229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 21434590 - 21434376
Alignment:
| Q |
1 |
aattgaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgcatccgccatacctacaacatttgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21434590 |
aattgaggtcgaattcctggcaacttgaattgaaaaagtggtatctctccatcaatatcagattatctttatgcatccgccatacctacaacatttgtta |
21434491 |
T |
|
| Q |
101 |
gcaacattttcatacattttctat-aaaagtggcgacttctgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagaga |
199 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21434490 |
gcaacattttcatacattttctataaaaagtggcgacttctgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagaga |
21434391 |
T |
|
| Q |
200 |
ataaactttagagga |
214 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
21434390 |
ataaactttagagga |
21434376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 211 - 647
Target Start/End: Complemental strand, 27074323 - 27073888
Alignment:
| Q |
211 |
aggagatcttgtcgatcgagatgtgaggcaggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgtatttttgttgatggaaa |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
27074323 |
aggagatcttgttgatcgagatgtgaggcaggtagttagttatcttttt---attcatctttcttctggtttgtgcattttgc--------tgatggaaa |
27074235 |
T |
|
| Q |
311 |
tataagttaacttgtcatcctagtttgatattctgataatgttatgtcattctttcaatcaattcatgatttccaggttttgtcatcacttcgaggtgaa |
410 |
Q |
| |
|
|||||||||| ||||||||||||| | |||||||||||||||||||| || ||| |||||||||| || ||||||||||||||||||| ||| ||||||| |
|
|
| T |
27074234 |
tataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaatcaattcttgttttccaggttttgtcatcatttcaaggtgaa |
27074135 |
T |
|
| Q |
411 |
gtcctaagcggatgtataatcgttttaa----------tggtcatgacttacgaaaactcaggaggatagcagagcggttaggagctacttgtttgacag |
500 |
Q |
| |
|
||| |||| |||||| | ||| |||| | | || |||||| || ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27074134 |
gtcttaagaggatgtgtgatcattttcagccttaattttcgtggtgacttgcggaaactcaggaggatagcagagcggttaggagctacttgtttgaaaa |
27074035 |
T |
|
| Q |
501 |
aacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccatgtgggcagagaaagaaaataagtttttggttaatcgtcgatg |
600 |
Q |
| |
|
||| || ||||||||||||||||| |||||||| ||| || |||||| | |||||| ||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
27074034 |
aacatgaccccactgtgacacatgtagttgctactgattttgtaactaaagagtcccgctgggccgtgaaagaaaagaagtttttggttaatcgtcgatg |
27073935 |
T |
|
| Q |
601 |
gctagaggcttcaaatttctttttgcaaaagcagcctgaggagaact |
647 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27073934 |
gctagaggctgcaaatttctttttgcaaaagcagcctgaggagaact |
27073888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 211 - 647
Target Start/End: Original strand, 26990609 - 26991044
Alignment:
| Q |
211 |
aggagatcttgtcgatcgagatgtgaggcaggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgtatttttgttgatggaaa |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
26990609 |
aggagatcttgttgatcgagatgtgaggcaggtagttagttatc---ttgttattcatctttcttctggttcgtgcattttgc--------tgatggaaa |
26990697 |
T |
|
| Q |
311 |
tataagttaacttgtcatcctagtttgatattctgataatgttatgtcattctttcaatcaattcatgatttccaggttttgtcatcacttcgaggtgaa |
410 |
Q |
| |
|
|||||||||| ||||||||||||| | |||||||||||||||||||| || ||| |||||||||| || ||||||||||||||||||| ||||||||||| |
|
|
| T |
26990698 |
tataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaatcaattcttgttttccaggttttgtcatcatttcgaggtgaa |
26990797 |
T |
|
| Q |
411 |
gtcctaagcggatgtataatcgtttt-------aatggtcatg---acttacgaaaactcaggaggatagcagagcggttaggagctacttgtttgacag |
500 |
Q |
| |
|
||| |||| |||||| | |||||||| ||| ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26990798 |
gtcttaagaggatgtgtgatcgttttcagccttaattttcatggtgacttgcgaatactcaggaggatagcagagcggttaggagctacttgtttgaaaa |
26990897 |
T |
|
| Q |
501 |
aacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccatgtgggcagagaaagaaaataagtttttggttaatcgtcgatg |
600 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| || || || |||||| |||||||| |||||| | | |||| || ||||||||||||| |||||| || |
|
|
| T |
26990898 |
aacttgaccccactgtgacacatgtaattggtacagattttgtaactaaggagtcccggtgggccgtgcaagagaagaagtttttggttagtcgtcgttg |
26990997 |
T |
|
| Q |
601 |
gctagaggcttcaaatttctttttgcaaaagcagcctgaggagaact |
647 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26990998 |
gctagaggctgcaaatttctttttgcaaaagcagcctgaggagaact |
26991044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 211 - 636
Target Start/End: Original strand, 27153529 - 27153960
Alignment:
| Q |
211 |
aggagatcttgtcgatcgagatgtgaggcaggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgtatttttgttgatggaaa |
310 |
Q |
| |
|
|||||| |||||||||| ||| |||||||| ||| |||||||| | |||||| |||||||||||||||||| ||||||||| || || |||| |
|
|
| T |
27153529 |
aggagaccttgtcgatcaagacatgaggcagatagctagttatcttgttgatagttatctttcttctagttcatgcattttg-ataatta------gaaa |
27153621 |
T |
|
| Q |
311 |
tataagttaacttgtcatcctagtttgatattctgataatgttatgtcattctttcaatcaattcatgatttccaggttttgtcatcacttcgaggtgaa |
410 |
Q |
| |
|
|||||||||| |||| |||||||| |||||| ||||| ||||| ||| |||| ||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
27153622 |
tataagttaatttgtgatcctagtgagatatttcgataacgttatatcactcttgcaatcaattcatgttttccatgttttgtcatcacttcgaggtgaa |
27153721 |
T |
|
| Q |
411 |
gtcctaagcggatgtataatcgttttaa-------------tggtcatgacttacgaaaactcaggaggatagcagagcggttaggagctacttgtttga |
497 |
Q |
| |
|
||||||||||||||| | |||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |
|
|
| T |
27153722 |
gtcctaagcggatgtgtgatcgttttcagctgtgcttttcatggtcatgacttacgaaaactcaggaagatagcagagcggttaggagctactcatttaa |
27153821 |
T |
|
| Q |
498 |
cagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccatgtgggcagagaaagaaaataagtttttggttaatcgtcg |
597 |
Q |
| |
|
|||||||| | |||||||||||||||| ||||||||||| ||| |||||| ||||||| ||||| |||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
27153822 |
cagaacttaggcccactgtgacacatgtagttgctaatgcgtttgtaactaaggagtctatgtgagcagtgaacgaaaatatgtttttggttaatcgtcg |
27153921 |
T |
|
| Q |
598 |
atggctagaggcttcaaatttctttttgcaaaagcagcc |
636 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
27153922 |
atggatagaggcttcaaatttctttttgcaaaagtagcc |
27153960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 211 - 647
Target Start/End: Original strand, 27029491 - 27029930
Alignment:
| Q |
211 |
aggagatcttgtcgatcgagatgtgaggcaggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgtatttttgttgatggaaa |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||| ||||| ||| |
|
|
| T |
27029491 |
aggagatcttgttgatcgagatgtgaggcaggtagttagttatc---ttgttattcatctttcttctggttcgtgcattttgt--------tgatgaaaa |
27029579 |
T |
|
| Q |
311 |
tata----agttaacttgtcatcctagtttgatattctgataatgttatgtcattctttcaatcaattcatgatttccaggttttgtcatcacttcgagg |
406 |
Q |
| |
|
|||| |||||| ||||||||||||| | |||||||||||||||||||| || ||| |||||||||| || ||||||||||||||||||| ||||||| |
|
|
| T |
27029580 |
tatatataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaatcaattcttgttttccaggttttgtcatcatttcgagg |
27029679 |
T |
|
| Q |
407 |
tgaagtcctaagcggatgtataatcgttttaa----------tggtcatgacttacgaaaactcaggaggatagcagagcggttaggagctacttgtttg |
496 |
Q |
| |
|
||||||| |||| |||||| | || ||||| | | || |||||| |||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27029680 |
tgaagtcttaagaggatgtgtgattgttttcagccttaattttcgtggtgacttgcgaatactcaggaggatagcagagaggttaggagctacttgtttg |
27029779 |
T |
|
| Q |
497 |
acagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccatgtgggcagagaaagaaaataagtttttggttaatcgtc |
596 |
Q |
| |
|
| | ||| || ||||||||||||||||| |||||||| ||| || |||||| | |||||| ||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
27029780 |
aaaaaacatgaccccactgtgacacatgtagttgctactgattttgtaactaaagagtcccgctgggccgttgaagaaaagaagtttttggttaatcgtc |
27029879 |
T |
|
| Q |
597 |
gatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaact |
647 |
Q |
| |
|
|||||||||||||| || |||||| ||| ||||||||||||||||| |||| |
|
|
| T |
27029880 |
gatggctagaggctgcagatttctatttccaaaagcagcctgaggaaaact |
27029930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 27153358 - 27153207
Alignment:
| Q |
58 |
tcagattatctttatgcatccgccatacctacaacatttgttagcaacattttcatacattttctataaaag-tggcgacttctgaatca----ttaagt |
152 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||||||||||||||||||||| ||||||| | | ||||||||||||| |||||| |
|
|
| T |
27153358 |
tcagattatctttgtgcttctgccatacctacaacatttgttagcaacattttca----------ataaaaggtagtgacttctgaatcattaattaagt |
27153269 |
T |
|
| Q |
153 |
ggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagagga |
214 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
27153268 |
ggatagatctttagcacatttgaaactatgagctgggtatttagagaataaactttagagga |
27153207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 26990419 - 26990328
Alignment:
| Q |
5 |
gaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgcatccgccatacctacaacattt |
96 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | | || |||||||||||||||||| |
|
|
| T |
26990419 |
gaggccgaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacattt |
26990328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 27029291 - 27029211
Alignment:
| Q |
15 |
tcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgcatccgccatacctacaacatt |
95 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | | || ||||||||||||||||| |
|
|
| T |
27029291 |
tcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacatt |
27029211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 27074523 - 27074576
Alignment:
| Q |
15 |
tcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatct |
68 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27074523 |
tcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatct |
27074576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 26990263 - 26990189
Alignment:
| Q |
140 |
tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagagga |
214 |
Q |
| |
|
||||||||||| |||||| || ||| ||||||||||| |||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
26990263 |
tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactttagagga |
26990189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 211 - 647
Target Start/End: Original strand, 34692866 - 34693301
Alignment:
| Q |
211 |
aggagatcttgtcgatcgagatgtgaggcaggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgtatttttgttgatggaaa |
310 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
34692866 |
aggagatcttgttgatcgagatgtgaggcaggtagttagttatcttttt---attcatctttcttctggttcgtgcattttgc--------tgatggaaa |
34692954 |
T |
|
| Q |
311 |
tataagttaacttgtcatcctagtttgatattctgataatgttatgtcattctttcaatcaattcatgatttccaggttttgtcatcacttcgaggtgaa |
410 |
Q |
| |
|
|||||||||| ||||||||||||| | |||||||||||||||||||| || ||| |||||||||| || ||||||||||||||||||| ||||||||||| |
|
|
| T |
34692955 |
tataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaatcaattcttgttttccaggttttgtcatcatttcgaggtgaa |
34693054 |
T |
|
| Q |
411 |
gtcctaagcggatgtataatcgtttt-------aatggtcatg---acttacgaaaactcaggaggatagcagagcggttaggagctacttgtttgacag |
500 |
Q |
| |
|
||| |||| |||||| | |||||||| ||| ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34693055 |
gtcttaagaggatgtgtgatcgttttcagccttaattttcatggtgacttgcgaatactcaggaggatagcagagcggttaggagctacttgtttgaaaa |
34693154 |
T |
|
| Q |
501 |
aacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccatgtgggcagagaaagaaaataagtttttggttaatcgtcgatg |
600 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| || || || |||||| |||||||| |||||| | | |||| || ||||||||||||| |||||| || |
|
|
| T |
34693155 |
aacttgaccccactgtgacacatgtaattggtacagattttgtaactaaggagtcccggtgggccgtgcaagagaagaagtttttggttagtcgtcgttg |
34693254 |
T |
|
| Q |
601 |
gctagaggcttcaaatttctttttgcaaaagcagcctgaggagaact |
647 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34693255 |
gctagaggctgcaaatttctttttgcaaaagcagcctgaggagaact |
34693301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 34692676 - 34692585
Alignment:
| Q |
5 |
gaggtcgaattcctggcaacttgaattgaaaaggtggtatctctccatcaatatcagattatctttatgcatccgccatacctacaacattt |
96 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | | || |||||||||||||||||| |
|
|
| T |
34692676 |
gaggccgaagtcctgacaacttgaattgaaaaagtggtatctctccatcaatatcagattatctctgtacttcggccatacctacaacattt |
34692585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 34692325 - 34692251
Alignment:
| Q |
140 |
tgaatcattaagtggatatatatttagcacatttgaaactatgagcttggaatatagagaataaactttagagga |
214 |
Q |
| |
|
||||||||||| |||||| || ||| ||||||||||| |||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
34692325 |
tgaatcattaaatggatagatcttttgcacatttgaatctatgaactttgtctatagagaataaactttagagga |
34692251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 482 - 647
Target Start/End: Complemental strand, 50171779 - 50171614
Alignment:
| Q |
482 |
ggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatga-gttggtaactgaggagtccatgtgggcagagaaagaaaataag |
580 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||||||||||| ||||||| ||| | ||| ||||||| |||| |||||||| |||||||| ||| |
|
|
| T |
50171779 |
ggagctacctgtttgatggaacttgaccccactgtgacacatgtggttgctactgatgctgg-aactgagaagtctcggtgggcagttaaagaaaagaag |
50171681 |
T |
|
| Q |
581 |
tttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaact |
647 |
Q |
| |
|
||||||||| ||| |||||| |||||||| |||| | ||||| ||||||||| || |||||||||| |
|
|
| T |
50171680 |
tttttggttcatccccgatggatagaggctgcaaactacttttggcaaaagcaaccagaggagaact |
50171614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 50172284 - 50172351
Alignment:
| Q |
39 |
tggtatctctccatcaatatcagattatctttatgcatccgccatacctacaacatttgttagcaaca |
106 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||||||| || |||| |||||||||||| ||||||||| |
|
|
| T |
50172284 |
tggtatctttccatcaatatcagattgtttttatgcttcatccatgcctacaacattttttagcaaca |
50172351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 50172045 - 50172008
Alignment:
| Q |
211 |
aggagatcttgtcgatcgagatgtgaggcaggtagtta |
248 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50172045 |
aggagatcttgttgatcgagatgtgaggcaggtagtta |
50172008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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