View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20962_low_6 (Length: 558)
Name: NF20962_low_6
Description: NF20962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20962_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 3115429 - 3114879
Alignment:
| Q |
1 |
agtgatccatatgtaactgtttctgtagctggtgctgttattgcaagaacttttgtaattagaaacaatgagaaccctgtttggaatcagcacttcaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3115429 |
agtgatccatatgtaactgtttctgtagctggtgctgttattgcaagaacttttgtaattagaaacaatgagaaccctgtttggaatcagcacttcaatg |
3115330 |
T |
|
| Q |
101 |
tacctgttgcacatcttgcatcagaaattcactttgttgtaaaagacaatgatattgttggttcacaggttattggtgcagttggaattccagtagaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3115329 |
tacctgttgcacatcttgcatcagaaattcactttgttgtaaaagacaatgatattgttggttcacaggttattggtgcagttggaattccagtagaaaa |
3115230 |
T |
|
| Q |
201 |
attatgtgatggtacaaaagttgaaggcttttttcccattctcaatactaatggaaaaccctttaagactgaaacaattttgagcttgtcaattcagtat |
300 |
Q |
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| T |
3115229 |
attatgtgatggtacaaaagttgaaggcttttttcccattctcaatactaatggaaaaccctttaagactgaagcaattttgagcttgtcaattcagtat |
3115130 |
T |
|
| Q |
301 |
acacctgttgataaggtagccctttatagcaatggtgttggtggtgattttcaaggtgttcctgctacatactttccacttagaaaaggtggaaaagtta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3115129 |
acacctgttgataaggtagccctttatagcaatggtgttggtggtgattttcaaggtgttcctgctacatactttccacttagaaaaggtggaaaagtta |
3115030 |
T |
|
| Q |
401 |
cactttatcaagatgctcatgttccacaaggttgtcttcctagtttgagggttgatggtggtgatcatgatttgagttatgacagtggaaattgttggca |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3115029 |
cactttatcaagatgctcatgttccacaaggttgtcttcctagtttgagggttgatggtggtgatcatgatttgagttatgagagtggaaattgttggca |
3114930 |
T |
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| Q |
501 |
tgatatctttgatgcaataagtcaggcgcgacgattggtatatattcttgg |
551 |
Q |
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| T |
3114929 |
tgatatctttgatgcaataagtcaggcgcgacgattggtatatattgttgg |
3114879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 3121285 - 3120735
Alignment:
| Q |
1 |
agtgatccatatgtaactgtttctgtagctggtgctgttattgcaagaacttttgtaattagaaacaatgagaaccctgtttggaatcagcacttcaatg |
100 |
Q |
| |
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|||||||||||||| || |||||||| ||||||||||| ||||| ||||||| ||| || ||||| |||||||||||||||||| || || || |||| |
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| T |
3121285 |
agtgatccatatgtcacagtttctgtggctggtgctgtgattgctagaacttctgtgatcagaaatgatgagaaccctgtttggatgcaacattttaatg |
3121186 |
T |
|
| Q |
101 |
tacctgttgcacatcttgcatcagaaattcactttgttgtaaaagacaatgatattgttggttcacaggttattggtgcagttggaattccagtagaaaa |
200 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
3121185 |
tacctgttgcacatcaagcatcagagattcactttgttgtaaaagacagtgatattgttggttcacagcttattggtgcagttggaattccagttgaaaa |
3121086 |
T |
|
| Q |
201 |
attatgtgatggtacaaaagttgaaggcttttttcccattctcaatactaatggaaaaccctttaagactgaaacaattttgagcttgtcaattcagtat |
300 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||| |
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| T |
3121085 |
gttatgtgatggtgcaaaagttgaaggctttttccccattcttaatactaatggaaaacccttcaagaccgaaaccgttttgagcttatcaattcagtat |
3120986 |
T |
|
| Q |
301 |
acacctgttgataaggtagccctttatagcaatggtgttggtggtgattttcaaggtgttcctgctacatactttccacttagaaaaggtggaaaagtta |
400 |
Q |
| |
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|| ||| |||||||| || | ||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3120985 |
actcctattgataagataacgctttatagcaatggtgttggttctgattatcaaggcgttcctgctacatattttccacttagaaaaggtggaaaagtta |
3120886 |
T |
|
| Q |
401 |
cactttatcaagatgctcatgttccacaaggttgtcttcctagtttgagggttgatggtggtgatcatgatttgagttatgacagtggaaattgttggca |
500 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||| |
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| T |
3120885 |
cactttatcaagatgctcatgttccacaaggttgtcttcctggtttgagggttgatggtggtgatcatgatgttatttatgagagtggaaattgttggca |
3120786 |
T |
|
| Q |
501 |
tgatatctttgatgcaataagtcaggcgcgacgattggtatatattcttgg |
551 |
Q |
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|||||||||||||||||||||||||| || |||||||| |||||| |||| |
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| T |
3120785 |
agatatctttgatgcaataagtcaggctcgtcgattggtctatattgttgg |
3120735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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