View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20962_low_8 (Length: 459)
Name: NF20962_low_8
Description: NF20962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20962_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Original strand, 48958139 - 48958569
Alignment:
| Q |
19 |
gcactggcagcagctctagtaccaccgatgcagaaaggcagtgaaacagccagaaatcttcacattgcgctgaatacattgaatgttcttctctttatgt |
118 |
Q |
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| T |
48958139 |
gcactggcagcagctctagtaccaccgatgcagaaaggcagtgaaacagccagaaatcttcacattgcgctgaatacattgaatgttcttctctttatgt |
48958238 |
T |
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| Q |
119 |
ggcagattcccactggacttgatattgtatggaaagtgtttgagttcacaaaatggccttgaatgtatgattctggtatgtaagtaagctcccaggtatt |
218 |
Q |
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| T |
48958239 |
ggcagattcccactggacttgatattgtatggaaagtgtttgagttcacaaaatggccttgaatgtatgattctggtatgtaagtaagctcccaggtatt |
48958338 |
T |
|
| Q |
219 |
ttactttcaaattagtatttggcaatattaataaatgcaaagtttgctattctgtattttcctttggccttgtaacataattgggtgtcagtcaagtact |
318 |
Q |
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| T |
48958339 |
ttactttcaaattagtatttggcaatattaataaatgcaaagtttgctattctgtattttcctttggccttgtaacataattgggtgtcagtcaagtact |
48958438 |
T |
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| Q |
319 |
gcataattgtattacaccattcttttgtataacgtagtaaataaaactgttcttaagttgaaattattacataaaggaattgtgctagcaccttgtcatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48958439 |
gcataattgtattacaccattcttttgtataacgtagtaaataaaactgttcttaagttgaaattattacataaaggaattgtgctagcaccttgtcatt |
48958538 |
T |
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| Q |
419 |
tggtaggcaattgtttagaaatattcttgga |
449 |
Q |
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| T |
48958539 |
tggtaggcaattgtttagaaatattgttgga |
48958569 |
T |
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