View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20962_low_9 (Length: 408)
Name: NF20962_low_9
Description: NF20962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20962_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 37 - 299
Target Start/End: Original strand, 16643978 - 16644242
Alignment:
| Q |
37 |
tatttttggcaaaaagatgcaatattttatctnnnnnnntttt---aaataaattagtcattatctttcaaaaaactttcaaagcatttacaatattttt |
133 |
Q |
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| T |
16643978 |
tatttttggcaaaaaaatgcaatattttatctaattttttttttttaaataaattagtcattatctttcaaaaaactttcaaagcatttacaatattttt |
16644077 |
T |
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| Q |
134 |
aatcctttttcattttacgtaaaaaattattgatgtgtagttagggtgcttaattagcaaggacaattaactagactttcagtcaaaatattttatttat |
233 |
Q |
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| T |
16644078 |
aattctttttcattttacgtaaaaaattgttgatgtgtagttagggtgcttaattagcaaggacaattaactagactttcagtcaaaata-tttatttat |
16644176 |
T |
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| Q |
234 |
taattagaaaacccaaaattagtgtttttctttgagttgaaaaattagtgtccttgaatcttcaaa |
299 |
Q |
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| T |
16644177 |
taattagaaaacacaaaattagtgtttttctttgagttgaaaaattagtgtccttgaatcttcaaa |
16644242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 16644281 - 16644317
Alignment:
| Q |
348 |
ataggaaaatttcaacagatatttttaataaactcaa |
384 |
Q |
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| T |
16644281 |
ataggaaaatttcaacagatatttttaataaactcaa |
16644317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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