View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20963_high_10 (Length: 468)

Name: NF20963_high_10
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20963_high_10
NF20963_high_10
[»] chr8 (37 HSPs)
chr8 (240-447)||(5568508-5568715)
chr8 (269-447)||(14403107-14403285)
chr8 (269-450)||(5624399-5624580)
chr8 (264-450)||(6313795-6313981)
chr8 (263-447)||(5598507-5598691)
chr8 (263-447)||(5636584-5636768)
chr8 (262-447)||(13164227-13164412)
chr8 (1-95)||(16383377-16383475)
chr8 (239-447)||(5547348-5547556)
chr8 (261-438)||(32632519-32632696)
chr8 (1-95)||(24307795-24307893)
chr8 (1-95)||(34307216-34307314)
chr8 (1-95)||(16056403-16056501)
chr8 (1-95)||(30479476-30479574)
chr8 (1-95)||(32032725-32032822)
chr8 (361-447)||(5562302-5562388)
chr8 (1-96)||(40423945-40424044)
chr8 (237-350)||(5572412-5572525)
chr8 (18-95)||(24307629-24307710)
chr8 (1-93)||(10621089-10621185)
chr8 (1-96)||(15048184-15048282)
chr8 (1-95)||(12831047-12831145)
chr8 (1-97)||(15197331-15197431)
chr8 (1-95)||(1179942-1180040)
chr8 (362-447)||(5572753-5572838)
chr8 (4-97)||(504126-504223)
chr8 (1-65)||(43414583-43414647)
chr8 (4-55)||(32708010-32708061)
chr8 (1-97)||(34012298-34012398)
chr8 (1-67)||(8841434-8841500)
chr8 (1-88)||(14547929-14548020)
chr8 (1-95)||(10284633-10284731)
chr8 (1-66)||(37038512-37038577)
chr8 (34-66)||(5957863-5957895)
chr8 (1-97)||(23122599-23122699)
chr8 (29-57)||(38229470-38229498)
chr8 (34-95)||(44507122-44507187)
[»] scaffold0363 (1 HSPs)
scaffold0363 (269-447)||(15568-15746)
[»] chr2 (30 HSPs)
chr2 (1-97)||(43490119-43490219)
chr2 (1-66)||(2997489-2997554)
chr2 (1-95)||(38732354-38732452)
chr2 (1-95)||(45097737-45097835)
chr2 (1-98)||(40613904-40614005)
chr2 (1-63)||(13365389-13365451)
chr2 (1-95)||(9058480-9058578)
chr2 (1-90)||(28863460-28863553)
chr2 (1-97)||(13438341-13438441)
chr2 (1-100)||(19930822-19930925)
chr2 (1-59)||(42257233-42257291)
chr2 (1-66)||(2533157-2533221)
chr2 (1-95)||(10249384-10249482)
chr2 (1-95)||(32505650-32505748)
chr2 (1-95)||(33436102-33436200)
chr2 (1-66)||(38273144-38273209)
chr2 (1-49)||(3034985-3035033)
chr2 (9-56)||(3737986-3738033)
chr2 (1-97)||(28381657-28381757)
chr2 (16-95)||(15428757-15428840)
chr2 (1-66)||(7465737-7465802)
chr2 (1-66)||(17473053-17473118)
chr2 (29-66)||(17820034-17820071)
chr2 (29-95)||(26891534-26891604)
chr2 (34-96)||(40701477-40701543)
chr2 (34-97)||(27864702-27864769)
chr2 (34-96)||(4060684-4060750)
chr2 (1-66)||(5574490-5574555)
chr2 (1-95)||(30915463-30915561)
chr2 (9-66)||(36168869-36168926)
[»] chr6 (12 HSPs)
chr6 (1-96)||(15508026-15508125)
chr6 (1-95)||(15990044-15990142)
chr6 (1-95)||(30341362-30341460)
chr6 (1-96)||(4231547-4231646)
chr6 (1-97)||(32869676-32869776)
chr6 (1-66)||(31109402-31109467)
chr6 (1-95)||(31976248-31976346)
chr6 (1-90)||(22880660-22880753)
chr6 (1-97)||(17598552-17598652)
chr6 (1-66)||(11427651-11427716)
chr6 (34-66)||(23128162-23128194)
chr6 (30-66)||(31953061-31953097)
[»] chr1 (27 HSPs)
chr1 (1-96)||(50591002-50591101)
chr1 (1-96)||(41608495-41608594)
chr1 (1-95)||(5959002-5959100)
chr1 (1-97)||(47748441-47748540)
chr1 (1-95)||(32813247-32813345)
chr1 (1-95)||(2581915-2582013)
chr1 (1-95)||(3000319-3000417)
chr1 (1-58)||(44332373-44332430)
chr1 (1-66)||(49811529-49811594)
chr1 (10-95)||(45044571-45044660)
chr1 (1-96)||(9474878-9474977)
chr1 (1-66)||(26440767-26440832)
chr1 (1-95)||(38595154-38595252)
chr1 (1-97)||(47452322-47452422)
chr1 (1-96)||(48716284-48716383)
chr1 (9-66)||(11152388-11152445)
chr1 (1-95)||(37926440-37926538)
chr1 (1-66)||(41758838-41758903)
chr1 (1-95)||(50630458-50630556)
chr1 (1-66)||(51898685-51898750)
chr1 (1-97)||(27564737-27564837)
chr1 (1-66)||(43165-43230)
chr1 (1-66)||(8346390-8346455)
chr1 (29-66)||(37649231-37649268)
chr1 (1-95)||(38632323-38632421)
chr1 (1-66)||(44548378-44548443)
chr1 (38-66)||(13414794-13414822)
[»] chr5 (19 HSPs)
chr5 (1-95)||(3921267-3921365)
chr5 (1-95)||(2252170-2252268)
chr5 (1-97)||(28177773-28177873)
chr5 (1-95)||(39688899-39688997)
chr5 (1-66)||(42414304-42414369)
chr5 (1-90)||(18520886-18520979)
chr5 (3-95)||(15409614-15409710)
chr5 (1-96)||(26720515-26720614)
chr5 (1-96)||(26990264-26990363)
chr5 (10-66)||(6679731-6679787)
chr5 (1-97)||(33149640-33149740)
chr5 (1-97)||(40145405-40145505)
chr5 (1-66)||(2740307-2740372)
chr5 (34-96)||(35785198-35785264)
chr5 (1-66)||(36732944-36733009)
chr5 (34-95)||(35943927-35943992)
chr5 (1-97)||(14831812-14831912)
chr5 (1-59)||(13811692-13811750)
chr5 (40-90)||(36875644-36875698)
[»] chr7 (26 HSPs)
chr7 (1-95)||(22343361-22343459)
chr7 (1-95)||(41915741-41915839)
chr7 (1-95)||(38044197-38044295)
chr7 (1-97)||(8238210-8238311)
chr7 (1-96)||(32564428-32564527)
chr7 (1-95)||(7727906-7728004)
chr7 (1-66)||(35522909-35522974)
chr7 (1-95)||(40846115-40846213)
chr7 (9-95)||(46374812-46374902)
chr7 (1-96)||(38267039-38267138)
chr7 (1-95)||(7389389-7389487)
chr7 (9-97)||(21234399-21234491)
chr7 (26-65)||(27744336-27744375)
chr7 (1-95)||(8080385-8080483)
chr7 (9-95)||(26296644-26296734)
chr7 (1-95)||(36361915-36362013)
chr7 (1-95)||(36362026-36362124)
chr7 (1-98)||(19329839-19329940)
chr7 (1-97)||(35137531-35137631)
chr7 (1-66)||(3434595-3434660)
chr7 (1-66)||(3694400-3694465)
chr7 (1-95)||(38837217-38837315)
chr7 (10-55)||(43317547-43317592)
chr7 (29-95)||(46033831-46033901)
chr7 (1-90)||(3784000-3784093)
chr7 (34-66)||(19436222-19436254)
[»] chr4 (29 HSPs)
chr4 (1-95)||(19670718-19670816)
chr4 (1-95)||(47986208-47986306)
chr4 (1-95)||(55475191-55475289)
chr4 (1-66)||(17983745-17983810)
chr4 (1-95)||(32766958-32767056)
chr4 (1-95)||(50813894-50813992)
chr4 (1-95)||(29547961-29548059)
chr4 (1-97)||(18924497-18924597)
chr4 (1-87)||(29589742-29589831)
chr4 (1-95)||(55079715-55079814)
chr4 (1-95)||(8343165-8343263)
chr4 (1-95)||(44536748-44536845)
chr4 (1-96)||(6034043-6034142)
chr4 (1-96)||(31910191-31910290)
chr4 (1-96)||(11511464-11511563)
chr4 (34-97)||(40574777-40574844)
chr4 (1-95)||(480449-480547)
chr4 (1-66)||(48183051-48183116)
chr4 (1-66)||(50052430-50052495)
chr4 (1-96)||(54473535-54473634)
chr4 (1-66)||(29977918-29977983)
chr4 (1-95)||(41236347-41236445)
chr4 (29-66)||(50526201-50526238)
chr4 (1-61)||(41823920-41823980)
chr4 (34-97)||(3481652-3481719)
chr4 (5-66)||(18769142-18769203)
chr4 (1-95)||(42044369-42044467)
chr4 (34-66)||(23608268-23608300)
chr4 (23-59)||(56300189-56300225)
[»] chr3 (28 HSPs)
chr3 (1-64)||(36331331-36331394)
chr3 (1-96)||(45058555-45058653)
chr3 (1-66)||(51419362-51419427)
chr3 (1-97)||(26141534-26141634)
chr3 (1-97)||(53982009-53982109)
chr3 (1-95)||(8076393-8076491)
chr3 (1-66)||(27714893-27714958)
chr3 (1-66)||(31456722-31456787)
chr3 (1-96)||(20764917-20765016)
chr3 (9-92)||(26754698-26754785)
chr3 (1-96)||(33644199-33644298)
chr3 (1-92)||(42823114-42823209)
chr3 (1-95)||(11347924-11348022)
chr3 (9-95)||(11907371-11907461)
chr3 (1-95)||(41189766-41189864)
chr3 (1-91)||(52629304-52629398)
chr3 (34-95)||(11095388-11095453)
chr3 (9-90)||(30801743-30801828)
chr3 (34-95)||(33118886-33118951)
chr3 (34-95)||(36707459-36707524)
chr3 (1-90)||(48587093-48587186)
chr3 (34-95)||(49607414-49607479)
chr3 (10-53)||(25395344-25395387)
chr3 (1-66)||(47531898-47531963)
chr3 (34-95)||(54868930-54868995)
chr3 (272-310)||(613070-613108)
chr3 (1-66)||(14623841-14623906)
chr3 (29-65)||(41080742-41080778)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-66)||(152531-152596)
[»] scaffold0316 (1 HSPs)
scaffold0316 (9-56)||(17097-17144)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 240 - 447
Target Start/End: Original strand, 5568508 - 5568715
Alignment:
Q  240 cttcttcctcccacaacgctactctgaagaaatatgacgttttcatcagttttcgaggcgaagatactcgcgcttgtttcacaagtcatcttcacgctgc 339  Q
    |||||||||| ||||  ||| ||| |||||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5568508 cttcttcctctcacagtgctgctcagaagaaatatgatgtcttcatcagctttcgaggcgaagatactcgcgctggtttcacaagtcatcttcacgctgc 5568607  T
Q  340 tctttgccgaacctatttacatacctacatagactacaagatcgaaaaaggagacgaagtttgggcagaacttgtgaaagcaatcaaacaatccactata 439  Q
    ||||| |||||||||||||||||| ||||||||||| | |||||| |||||||| ||||||||| ||||||||| |||||||||||||||||| ||| |     
T  5568608 tctttcccgaacctatttacatacttacatagactataggatcgagaaaggagatgaagtttggccagaacttgagaaagcaatcaaacaatcaactctg 5568707  T
Q  440 tttcttgt 447  Q
    ||||||||    
T  5568708 tttcttgt 5568715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 269 - 447
Target Start/End: Original strand, 14403107 - 14403285
Alignment:
Q  269 aaatatgacgttttcatcagttttcgaggcgaagatactcgcgcttgtttcacaagtcatcttcacgctgctctttgccgaacctatttacatacctaca 368  Q
    |||||||| ||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  14403107 aaatatgatgttttcatcagctttcgaggcgaagatactcgaacttgtttcacaagccatcttcacgctgctctttgccgaacccatttacatacctaca 14403206  T
Q  369 tagactacaagatcgaaaaaggagacgaagtttgggcagaacttgtgaaagcaatcaaacaatccactatatttcttgt 447  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||||||||||||||||||||| | ||||||||    
T  14403207 tagactacaagatcgagaaaggagatgatgtttggtcagaacttgttaaagcaatcaaacaatccactctttttcttgt 14403285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 269 - 450
Target Start/End: Original strand, 5624399 - 5624580
Alignment:
Q  269 aaatatgacgttttcatcagttttcgaggcgaagatactcgcgcttgtttcacaagtcatcttcacgctgctctttgccgaacctatttacatacctaca 368  Q
    |||||||| ||||||||||| ||| ||||||| || ||||||||| | |||||||| |||||| |||||||| | ||||||| |||| | ||||||||||    
T  5624399 aaatatgatgttttcatcagctttagaggcgacgacactcgcgctggattcacaagccatctttacgctgctttgtgccgaaactatatccatacctaca 5624498  T
Q  369 tagactacaagatcgaaaaaggagacgaagtttgggcagaacttgtgaaagcaatcaaacaatccactatatttcttgtggt 450  Q
    ||||| | |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | | |||||||||    
T  5624499 tagacaaaaagatcgagaaaggagatgaagtttgggcagaacttgtgaaagcaatcaaacaatccactctgtatcttgtggt 5624580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 264 - 450
Target Start/End: Complemental strand, 6313981 - 6313795
Alignment:
Q  264 tgaagaaatatgacgttttcatcagttttcgaggcgaagatactcgcgcttgtttcacaagtcatcttcacgctgctctttgccgaacctatttacatac 363  Q
    ||||||||||||| ||||||||||| ||| |||| || || ||||||||| | |||||||| |||||| |||||| | | ||||||| | |  |  ||||    
T  6313981 tgaagaaatatgatgttttcatcagctttagaggtgatgacactcgcgctggattcacaagccatctttacgctgatttgtgccgaagcaagatttatac 6313882  T
Q  364 ctacatagactacaagatcgaaaaaggagacgaagtttgggcagaacttgtgaaagcaatcaaacaatccactatatttcttgtggt 450  Q
    |||||||||||||| |||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  6313881 ctacatagactacaggatcgagaaaggagatgaagtttgggtagaactagtgaaagcaatcaaacaatccactatatttcttgtggt 6313795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 263 - 447
Target Start/End: Complemental strand, 5598691 - 5598507
Alignment:
Q  263 ctgaagaaatatgacgttttcatcagttttcgaggcgaagatactcgcgcttgtttcacaagtcatcttcacgctgctctttgccgaacctatttacata 362  Q
    ||||| |||||||| ||||||||||| ||| ||||||| || ||||||||| |||||||||| |||||| || ||||||| |||| | ||||| |  |||    
T  5598691 ctgaaaaaatatgatgttttcatcagctttagaggcgatgacactcgcgctggtttcacaagccatctttacactgctctatgccaatcctatatcaata 5598592  T
Q  363 cctacatagactacaagatcgaaaaaggagacgaagtttgggcagaacttgtgaaagcaatcaaacaatccactatatttcttgt 447  Q
    |||||||||| || | |||||| |||||||| ||||||||| |||||||||| |||||||||||| |||||||| | ||||||||    
T  5598591 cctacatagattataggatcgagaaaggagatgaagtttggtcagaacttgttaaagcaatcaaagaatccactctgtttcttgt 5598507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 263 - 447
Target Start/End: Original strand, 5636584 - 5636768
Alignment:
Q  263 ctgaagaaatatgacgttttcatcagttttcgaggcgaagatactcgcgcttgtttcacaagtcatcttcacgctgctctttgccgaacctatttacata 362  Q
    ||||| |||||||| ||||||||||| ||| ||||||| || ||||||||| |||||||||| |||||| || ||||||| |||| | ||||| |  |||    
T  5636584 ctgaaaaaatatgatgttttcatcagctttagaggcgatgacactcgcgctggtttcacaagccatctttacactgctctatgccaatcctatatcaata 5636683  T
Q  363 cctacatagactacaagatcgaaaaaggagacgaagtttgggcagaacttgtgaaagcaatcaaacaatccactatatttcttgt 447  Q
    |||||||||| || | |||||| |||||||| ||||||||| |||||||||| |||||||||||| |||||||| | ||||||||    
T  5636684 cctacatagattataggatcgagaaaggagatgaagtttggtcagaacttgttaaagcaatcaaagaatccactctgtttcttgt 5636768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 262 - 447
Target Start/End: Original strand, 13164227 - 13164412
Alignment:
Q  262 tctgaagaaatatgacgttttcatcagttttcgaggcgaagatactcgcgcttgtttcacaagtcatcttcacgctgctctttgccgaacctatttacat 361  Q
    |||||| |||||||| ||||| ||||| |||||||| || || || || ||| |||||||||| ||||||||||||||  | ||||||| | | || |||    
T  13164227 tctgaaaaaatatgatgtttttatcagctttcgaggtgacgacacacgggctggtttcacaagccatcttcacgctgcattgtgccgaagcaactttcat 13164326  T
Q  362 acctacatagactacaagatcgaaaaaggagacgaagtttgggcagaacttgtgaaagcaatcaaacaatccactatatttcttgt 447  Q
    || ||||||||||||| ||||||||||||||| |||||||||| |||||||  ||||||||||||  |||||||| | ||||||||    
T  13164327 acatacatagactacaggatcgaaaaaggagatgaagtttggggagaacttcagaaagcaatcaatgaatccactctttttcttgt 13164412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 16383475 - 16383377
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||||||||||||    
T  16383475 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 16383377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 239 - 447
Target Start/End: Original strand, 5547348 - 5547556
Alignment:
Q  239 tcttcttcctcccacaacgctactctgaagaaatatgacgttttcatcagttttcgaggcgaagatactcgcgcttgtttcacaagtcatcttcacgctg 338  Q
    ||||||||||| ||| ||||| || ||||||||||||| ||||||||||| ||||||||||||||||| |||| | |||||| ||| |||||| |    |    
T  5547348 tcttcttcctctcaccacgcttctttgaagaaatatgatgttttcatcagctttcgaggcgaagatacacgcgttggtttcataagccatctttataaag 5547447  T
Q  339 ctctttgccgaacctatttacatacctacatagactacaagatcgaaaaaggagacgaagtttgggcagaacttgtgaaagcaatcaaacaatccactat 438  Q
    || |  ||||||   || | ||||||||||| ||| ||  ||| |||||||||||  |||||||||||||||||||||| ||||| |||||||||||| |    
T  5547448 ctttgcgccgaaaacatatccatacctacattgacaacttgattgaaaaaggagatcaagtttgggcagaacttgtgaaggcaatgaaacaatccacttt 5547547  T
Q  439 atttcttgt 447  Q
     ||||||||    
T  5547548 gtttcttgt 5547556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 261 - 438
Target Start/End: Original strand, 32632519 - 32632696
Alignment:
Q  261 ctctgaagaaatatgacgttttcatcagttttcgaggcgaagatactcgcgcttgtttcacaagtcatcttcacgctgctctttgccgaacctatttaca 360  Q
    ||||||| |||||||| ||||||||||| ||| |||||||||| ||||||||| | |||||||| |||||| |||   || | |  | || | | || ||    
T  32632519 ctctgaaaaaatatgatgttttcatcagctttagaggcgaagacactcgcgctggattcacaagccatctttacgaaactttcttacaaagcaagtttca 32632618  T
Q  361 tacctacatagactacaagatcgaaaaaggagacgaagtttgggcagaacttgtgaaagcaatcaaacaatccactat 438  Q
    ||| ||||||||||||| |||| ||||||||||| | |||||||||||||||  ||||||||||||||||||||||||    
T  32632619 tacatacatagactacaggatccaaaaaggagaccatgtttgggcagaacttacgaaagcaatcaaacaatccactat 32632696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 24307795 - 24307893
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || ||||    ||||||||||| |||||||||||||||||    
T  24307795 aaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactc 24307893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 34307314 - 34307216
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||||||||||||    
T  34307314 aaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 34307216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 16056403 - 16056501
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||    ||| ||||| | |||||||||||||||||    
T  16056403 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataactc 16056501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 30479476 - 30479574
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    |||||||||||||||| |||| |||| |||||||||||||||||| ||||| ||||||||||||||    ||||||||||| |||||||||||||||||    
T  30479476 aaagtgtacttgtgcgaggtccatatagccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 32032822 - 32032725
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||| || || ||||||||||||||||||||||||||||| |||||| || ||||    ||||||||||| |||||||||||||||||    
T  32032822 aaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtcaa-ggatgtattgccacctaagggtgtttatgtatcataactc 32032725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 447
Target Start/End: Original strand, 5562302 - 5562388
Alignment:
Q  361 tacctacatagactacaagatcgaaaaaggagacgaagtttgggcagaacttgtgaaagcaatcaaacaatccactatatttcttgt 447  Q
    ||||||||| ||| ||  ||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| | ||||||||    
T  5562302 tacctacattgacaacttgattgaaaaaggagatgaagtttgggcagaacttgtgaaggcaatgaaacaatccactttgtttcttgt 5562388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 40423945 - 40424044
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| | ||| | || |||||||||||||||||| ||||||||||||||    ||||||||||||| |||||||||| |||||    
T  40423945 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattactca 40424044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 237 - 350
Target Start/End: Original strand, 5572412 - 5572525
Alignment:
Q  237 cttcttcttcctcccacaacgctactctgaagaaatatgacgttttcatcagttttcgaggcgaagatactcgcgcttgtttcacaagtcatcttcacgc 336  Q
    |||||||||||||||||   ||| || |||| |||||||| ||||||||||| ||| ||||| |||| | ||| || ||||||||||| |||||||||||    
T  5572412 cttcttcttcctcccacgctgctgctttgaaaaaatatgatgttttcatcagcttttgaggcaaagacaatcgtgcctgtttcacaagccatcttcacgc 5572511  T
Q  337 tgctctttgccgaa 350  Q
    |||| | |||||||    
T  5572512 tgctttgtgccgaa 5572525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 24307710 - 24307629
Alignment:
Q  18 ggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    |||| |||||||||||| ||||||||||||||||||||||| || ||||    ||||||||||| |||||||||||||||||    
T  24307710 ggtccatatggccacatatcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactc 24307629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 10621089 - 10621185
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataac 93  Q
    ||||||| |||||||||| || || |||| || |||||||||||||||||||||||||||||||||    ||||||||| | | |||||||||||||    
T  10621089 aaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataac 10621185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 15048184 - 15048282
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| || |||| || |||||||||||||||| ||||||||||||||||    ||||||||| | | ||||||||||||||||    
T  15048184 aaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgt-ggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactca 15048282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 12831145 - 12831047
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||| ||||    
T  12831145 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 15197431 - 15197331
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    |||||||| || | |||||||||| |||||    
T  15197431 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactca 15197332  T
Q  97 t 97  Q
    |    
T  15197331 t 15197331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 1179942 - 1180040
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| |||||||||  || | ||| | || |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||| ||||    
T  1179942 aaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 447
Target Start/End: Original strand, 5572753 - 5572838
Alignment:
Q  362 acctacatagactacaagatcgaaaaaggagacgaagtttgggcagaacttgtgaaagcaatcaaacaatccactatatttcttgt 447  Q
    |||||||||||||| | |||| |||||||||| ||||||||| |||||||  |||||||||||||  | |||||| | ||||||||    
T  5572753 acctacatagactataggatccaaaaaggagatgaagtttggacagaactcttgaaagcaatcaaggattccactttgtttcttgt 5572838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 504126 - 504223
Alignment:
Q  4 gtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactcat 97  Q
    |||| ||||||||||||| |  || | || |||||||||||||||||||||||||| ||||||    ||||||||||| | |||||||||| ||||||    
T  504126 gtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactcat 504223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 43414583 - 43414647
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgt 65  Q
    ||||||| |||||||||| || || || |||| ||| ||||||||||||||||||||||||||||    
T  43414583 aaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgt 43414647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 32708010 - 32708061
Alignment:
Q  4 gtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgt 55  Q
    |||||||||||||||||| |||| ||||||| |||||||||||| |||||||    
T  32708010 gtgtacttgtgcggggtccatatagccacatctcagatttttgtatgggtgt 32708061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 34012298 - 34012398
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| |||||||||| || |  || | || ||||| |||||||||||||||||||||||||||    ||||||||||| | |||||||||| |||||    
T  34012298 aaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactca 34012397  T
Q  97 t 97  Q
    |    
T  34012398 t 34012398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 8841434 - 8841500
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtac 67  Q
    ||||||| ||||||||||||| |  || | || ||| ||||||||||||||||||||||||||||||    
T  8841434 aaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtac 8841500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 14548020 - 14547929
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatc 88  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||| ||||||    ||||||||||| | ||||||||    
T  14548020 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatc 14547929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 10284633 - 10284731
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || ||||| ||||||||||||||||||||| |||||    ||| ||||||| | |||||||||||||||    
T  10284633 aaagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataactc 10284731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37038577 - 37038512
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||||||| || |  || | || |||||||||||||||||||||||||||||||||    
T  37038577 aaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 37038512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 5957895 - 5957863
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    |||||||||||||||||||||||||||||||||    
T  5957895 tgtcagatttttgtgtgggtgtcaaagggtgta 5957863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 23122599 - 23122699
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||| ||||||||| |  || | || |||||||||||||||||||||||||| ||||||    ||| ||||||| | |||||||||| |||||    
T  23122599 aaagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactca 23122698  T
Q  97 t 97  Q
    |    
T  23122699 t 23122699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 38229498 - 38229470
Alignment:
Q  29 ccacatgtcagatttttgtgtgggtgtca 57  Q
    |||||||||||||||||||||||||||||    
T  38229498 ccacatgtcagatttttgtgtgggtgtca 38229470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 44507122 - 44507187
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    |||||||||||||||||||||| |||| |||||    ||||||||||| | |||||||||| ||||    
T  44507122 tgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactc 44507187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 269 - 447
Target Start/End: Complemental strand, 15746 - 15568
Alignment:
Q  269 aaatatgacgttttcatcagttttcgaggcgaagatactcgcgcttgtttcacaagtcatcttcacgctgctctttgccgaacctatttacatacctaca 368  Q
    |||||||| ||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  15746 aaatatgatgttttcatcagctttcgaggcgaagatactcgaacttgtttcacaagccatcttcacgctgctctttgccgaacccatttacatacctaca 15647  T
Q  369 tagactacaagatcgaaaaaggagacgaagtttgggcagaacttgtgaaagcaatcaaacaatccactatatttcttgt 447  Q
    |||||||||||||||| |||||||| || |||||| |||||||||| ||||||||||||||||||||| | ||||||||    
T  15646 tagactacaagatcgagaaaggagatgatgtttggtcagaacttgttaaagcaatcaaacaatccactctttttcttgt 15568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 43490219 - 43490119
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| ||||||||||||||||||    
T  43490219 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactca 43490120  T
Q  97 t 97  Q
    |    
T  43490119 t 43490119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2997489 - 2997554
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  2997489 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgta 2997554  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 38732452 - 38732354
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || ||||    ||| ||||||| |||||||||||||||||    
T  38732452 aaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataactc 38732354  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 45097737 - 45097835
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||    ||||||||| | |||||||||||||||||    
T  45097737 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactc 45097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 40613904 - 40614005
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||    ||||||||| | | ||||||||||||||||    
T  40613904 aaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactca 40614003  T
Q  97 tg 98  Q
    ||    
T  40614004 tg 40614005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13365451 - 13365389
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggt 63  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  13365451 aaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggt 13365389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 9058578 - 9058480
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| | ||| | || |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||| ||||    
T  9058578 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9058480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28863553 - 28863460
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 90  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  28863553 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 28863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 13438441 - 13438341
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||| ||||    ||||||||||| | |||||||||| |||||    
T  13438441 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactca 13438342  T
Q  97 t 97  Q
    |    
T  13438341 t 13438341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19930822 - 19930925
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    |||||||  |||||||||||| | ||| | || |||||||||||||||||| ||||||||||||||    ||||||||||| | |||||||||| | |||    
T  19930822 aaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcattattca 19930921  T
Q  97 tggg 100  Q
    ||||    
T  19930922 tggg 19930925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42257291 - 42257233
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaa 59  Q
    ||||||| ||||||||||||| || ||||||| |||||||||||| |||||||||||||    
T  42257291 aaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaa 42257233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2533221 - 2533157
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||||||||||||| |||| || |||||||||||||||| ||||||||||| ||||    
T  2533221 aaagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgt-ggtgtcaaaggatgta 2533157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 10249384 - 10249482
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||| ||||||    ||||||||||| | |||||||||| ||||    
T  10249384 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 10249482  T

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Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 32505650 - 32505748
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||| ||||||    ||||||||||| | |||||||||| ||||    
T  32505650 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 32505748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33436102 - 33436200
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || ||| |||||||||||||||||||||||||||||    ||||||||||| | |||||||||| ||||    
T  33436102 aaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 33436200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 38273144 - 38273209
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| || |||||||||| || |||| || |||||||||||||||||||||| ||||||||||    
T  38273144 aaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgta 38273209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3034985 - 3035033
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgt 49  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||||||||    
T  3034985 aaagtatacttgtgcggggtccatatgaccacatgtcagatttttgtgt 3035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 3738033 - 3737986
Alignment:
Q  9 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtc 56  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  3738033 cttgtgcggggtccacatgaccacatgtcagatttttgtgtgggtgtc 3737986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 28381657 - 28381757
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||| ||| || || | || ||||||||||||||||||||||| || ||||||    ||||||||||| | |||||||||| |||||    
T  28381657 aaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactca 28381756  T
Q  97 t 97  Q
    |    
T  28381757 t 28381757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 15428757 - 15428840
Alignment:
Q  16 ggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||| || |||||||||||||||||||||||||| |||| || |||||||    ||| ||||| | |||||||||||||||||    
T  15428757 ggggtttacatggccacatgtcagatttttgtgtgagtgttaaggggtgtatggccacataaggatgtttatgtatcataactc 15428840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7465737 - 7465802
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||| |||||| |  || | || |||||||||||||||||||||||||||||||||    
T  7465737 aaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 7465802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17473118 - 17473053
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||||||| || |  || | || |||||||||||||||||||||||||||||||||    
T  17473118 aaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 17473053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 17820034 - 17820071
Alignment:
Q  29 ccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    |||||||||||||||||||||||||||||| |||||||    
T  17820034 ccacatgtcagatttttgtgtgggtgtcaaggggtgta 17820071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 26891534 - 26891604
Alignment:
Q  29 ccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    |||||||||||||||||||||||||||| | |||||||    |||||||||||   |||||||||||||||    
T  26891534 ccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactc 26891604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 40701543 - 40701477
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    |||||||||||||||||||||||||| ||||||    ||||||||||| | |||||||||| |||||    
T  40701543 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 40701477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 27864769 - 27864702
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactcat 97  Q
    |||||||||||||||||| ||||||||||||||    ||| ||||||| | |||||||||| ||||||    
T  27864769 tgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcattactcat 27864702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 4060750 - 4060684
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    |||||||||||||||||| ||||||| ||||||    ||||||||||| | |||||||||| |||||    
T  4060750 tgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactca 4060684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5574490 - 5574555
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||||||| || |  || | || |||||||||||| ||||||||||||||||||||    
T  5574490 aaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgta 5574555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 30915561 - 30915463
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||| ||||||| |  || | || |||||||||||| |||||| |||||||||||||    ||||||||||| | |||||||||| ||||    
T  30915561 aaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 30915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 36168926 - 36168869
Alignment:
Q  9 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||||||||| || ||||||| ||||| ||||||||||||| || ||||| ||||    
T  36168926 cttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgta 36168869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 15508026 - 15508125
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| ||||||||||||||||||    
T  15508026 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactca 15508125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 15990044 - 15990142
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||||||||||||    
T  15990044 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15990142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 30341362 - 30341460
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||||||||||||    
T  30341362 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 30341460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 4231646 - 4231547
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||    ||||||| | | |||||| |||||||||||    
T  4231646 aaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgtttatgaatcataactca 4231547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 32869776 - 32869676
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||| | |||||    
T  32869776 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatctttactca 32869677  T
Q  97 t 97  Q
    |    
T  32869676 t 32869676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 31109402 - 31109467
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||||||| |||||||||||  || | || |||||||||||||||||| ||||||||||||||    
T  31109402 aaagtgtacttttgcggggtctacgtgactacgtgtcagatttttgtgtggatgtcaaagggtgta 31109467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 31976346 - 31976248
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||  || || |||| |||||||||||||||||||||| ||||||| ||    ||||||||| | | |||||||||||||||    
T  31976346 aaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactc 31976248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 22880660 - 22880753
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 90  Q
    ||||||| ||||||||||||| |  || | || ||||||| |||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  22880660 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 22880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 17598652 - 17598552
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||| | ||||    ||||||||||| | |||||||||| |||||    
T  17598652 aaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactca 17598553  T
Q  97 t 97  Q
    |    
T  17598552 t 17598552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 11427716 - 11427651
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||||||| || |  || | || |||||||||||||||||||||||||||| ||||    
T  11427716 aaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgta 11427651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 23128162 - 23128194
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    |||||||||||||||||||||||||||| ||||    
T  23128162 tgtcagatttttgtgtgggtgtcaaaggatgta 23128194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 31953061 - 31953097
Alignment:
Q  30 cacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    |||||||||||||||| |||||||||||| |||||||    
T  31953061 cacatgtcagatttttatgtgggtgtcaaggggtgta 31953097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 50591002 - 50591101
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| ||||||||||||||||||    
T  50591002 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactca 50591101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 41608495 - 41608594
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||||||    ||||||||| | ||||||||||||||||||    
T  41608495 aaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactca 41608594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5959002 - 5959100
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  ||||||    ||| ||||||| |||||||||||||||||    
T  5959002 aaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataactc 5959100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 47748540 - 47748441
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||| |||||||||||| || ||||||||||||||||||||||| | |||||||| |||||||||    ||||||||||||||||||||||||||||||    
T  47748540 aaagtatacttgtgcgggatccatatggccacatgtcagatttttatatgggtgtc-aagggtgtattgccacctaagggtatttatgtatcataactca 47748442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 32813345 - 32813247
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| || || |||| |||||||||||||||||||||| ||||||||||    ||||||||| | | |||||||||||||||    
T  32813345 aaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 32813247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2582013 - 2581915
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||| ||||    
T  2582013 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 2581915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 3000417 - 3000319
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||| ||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| |||||||||||| ||||    
T  3000417 aaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 44332373 - 44332430
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaa 58  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||    
T  44332373 aaagtatacttgtgcggggtccatagggccacatgtcagatttttatgtgggtgtcaa 44332430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 49811529 - 49811594
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| ||||||||| ||||||||||| || |||||||||||||||||| ||||||| ||||||    
T  49811529 aaagtgtgcttgtgcggagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgta 49811594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 45044571 - 45044660
Alignment:
Q  10 ttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    |||||||||||| || |||| ||||||||||||||||| ||||||||||| ||||||    |||||||||  || |||||||||||||||    
T  45044571 ttgtgcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaaggaaatgtatgtatcataactc 45044660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 9474878 - 9474977
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    |||||||  |||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||| |||||    
T  9474878 aaagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 9474977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26440832 - 26440767
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| ||| |||||| || || ||||||| |||||||||||||||||||||| ||||||||||    
T  26440832 aaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgta 26440767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 38595252 - 38595154
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||| ||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||| ||| |||||||||||| ||||    
T  38595252 aaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactc 38595154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 47452322 - 47452422
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| |||||||||| || |  || | || ||| |||||||||||||||||||||||||||||    ||||||||||| | |||||||||| |||||    
T  47452322 aaagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactca 47452421  T
Q  97 t 97  Q
    |    
T  47452422 t 47452422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 48716284 - 48716383
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||| ||||||| ||||||    ||||||||||| | |||||||||| |||||    
T  48716284 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactca 48716383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 11152388 - 11152445
Alignment:
Q  9 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||||||||||| ||| | || |||||||||||||||||| |||| |||||||||    
T  11152388 cttgtgcggggtctacatgactacgtgtcagatttttgtgtggatgtcgaagggtgta 11152445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 37926440 - 37926538
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||| |||| || || ||||||| |||||||||||| ||||||||| ||| | ||||    ||||||| | ||| |||||||||||||||    
T  37926440 aaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataactc 37926538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41758903 - 41758838
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    |||||||  |||||||||||| || || | || |||||||||||||||||| ||||||||||||||    
T  41758903 aaagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgta 41758838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 50630556 - 50630458
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || ||||||||||||||||||||  |||||| ||||    ||||||||||||| |||||||||| ||||    
T  50630556 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcattactc 50630458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 51898685 - 51898750
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||||||| || |  || | || |||||||||||||||||||||||||||||||||    
T  51898685 aaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 51898750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 27564737 - 27564837
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| |  ||   || |||||||||||||||||||||||||| ||||||    ||||||||| | | |||||||||| |||||    
T  27564737 aaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactca 27564836  T
Q  97 t 97  Q
    |    
T  27564837 t 27564837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43230 - 43165
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| ||||||||| ||| |  || | || |||||||||||||||||||||||||||| ||||    
T  43230 aaagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgta 43165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8346390 - 8346455
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| ||||||| ||||| |  || | || |||||||||||||||||||||||||| ||||||    
T  8346390 aaagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgta 8346455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 37649268 - 37649231
Alignment:
Q  29 ccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  37649268 ccacgtgtcagatttttgtgtgggtgtcaaagagtgta 37649231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 38632323 - 38632421
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||| ||| ||| ||||||    ||||||||||| | |||||||||| ||||    
T  38632323 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactc 38632421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44548378 - 44548443
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||| ||||| ||||||    
T  44548378 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgta 44548443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 13414822 - 13414794
Alignment:
Q  38 agatttttgtgtgggtgtcaaagggtgta 66  Q
    |||||||||||||||||||||||||||||    
T  13414822 agatttttgtgtgggtgtcaaagggtgta 13414794  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 3921267 - 3921365
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||||||||||||    
T  3921267 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 3921365  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 2252170 - 2252268
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    ||||||||| | |||||||||||||||||    
T  2252170 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 2252268  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28177873 - 28177773
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    |||||||  |||||||||||| || || |||| |||||||||||||||||||||||||||||||||    ||||||||| | | ||||||||||||||||    
T  28177873 aaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactca 28177774  T
Q  97 t 97  Q
    |    
T  28177773 t 28177773  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 39688899 - 39688997
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||| ||||||||  ||||| |||||| ||||||||||||||||||||||| || ||||    ||| ||||||| |||||||||||||||||    
T  39688899 aaagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactc 39688997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42414304 - 42414369
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| ||||||||||||| | ||| | || |||||||||||||||||||||||||||||||||    
T  42414304 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 42414369  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 18520886 - 18520979
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 90  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  18520886 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 18520979  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 15409614 - 15409710
Alignment:
Q  3 agtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||| ||||||||||||| || |||| || |||||||||||||||||||||||||||  ||||    ||||||||| | | |||||||||||||||    
T  15409614 agtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactc 15409710  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 26720614 - 26720515
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| |||||||||| || || ||||||| |||||||||||| ||| ||||| ||||||||||    ||||||||| | | ||||||||||||||||    
T  26720614 aaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactca 26720515  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 26990363 - 26990264
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| |||||||||| || || ||||||| |||||||||||| ||| ||||| ||||||||||    ||||||||| | | ||||||||||||||||    
T  26990363 aaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactca 26990264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 6679787 - 6679731
Alignment:
Q  10 ttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    |||||||||||| || || |||| |||||||||||||||||||||||||| ||||||    
T  6679787 ttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgta 6679731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 33149640 - 33149740
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| |||||||||| || |  || | || ||||| |||||||||||||||||||||||||||    ||||||||||| | |||||||||| |||||    
T  33149640 aaagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactca 33149739  T
Q  97 t 97  Q
    |    
T  33149740 t 33149740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 40145505 - 40145405
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||| ||| ||||||||||    ||||||||||| | |||||||||| |||||    
T  40145505 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcattactca 40145406  T
Q  97 t 97  Q
    |    
T  40145405 t 40145405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2740372 - 2740307
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||||||| || |  || | || |||||||||||||||||||||||||||||||||    
T  2740372 aaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 2740307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 35785264 - 35785198
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    |||||||||||||||||||||||||| ||||||    ||||||||||| | |||||||||| |||||    
T  35785264 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactca 35785198  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36732944 - 36733009
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| ||||||||||||| |  || | |  |||||||||||||||||||||||||||||||||    
T  36732944 aaagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgta 36733009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 35943927 - 35943992
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    |||||||||||||||||||||||||| | ||||    ||||||||||| | |||||||||||||||    
T  35943927 tgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 14831912 - 14831812
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| |||||||||| || |  || | || |||||||||||| ||||||||||||||||||||    |||||||| || | |||||||||| |||||    
T  14831912 aaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactca 14831813  T
Q  97 t 97  Q
    |    
T  14831812 t 14831812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13811750 - 13811692
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaa 59  Q
    ||||||| ||||||||||||| |  || | || ||||||||||||||||||||||||||    
T  13811750 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaa 13811692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 36875644 - 36875698
Alignment:
Q  40 atttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 90  Q
    |||||||||||||||||||||||||||    ||||||||||| | ||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 36875698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 22343459 - 22343361
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||    ||||||||||| |||||||||||||||||    
T  22343459 aaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 22343361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 41915839 - 41915741
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||    ||||||||||| |||||||||||||||||    
T  41915839 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 41915741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 38044295 - 38044197
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| |||||||    ||||||||||| |||||||||||||||||    
T  38044295 aaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 38044197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 8238311 - 8238210
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----caccta-agggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||    |||||| ||||| |||||||||||||||||    
T  8238311 aaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactc 8238212  T
Q  96 at 97  Q
    ||    
T  8238211 at 8238210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 32564428 - 32564527
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    |||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||    ||||||||  | ||||||||||||||||||    
T  32564428 aaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactca 32564527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 7728004 - 7727906
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||| ||||  ||||||  ||||||    ||||||||||| |||||||||||||||||    
T  7728004 aaagtgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcataactc 7727906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35522974 - 35522909
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||||||| || |||||||||| |||||||||||||||||||||| ||| ||||||    
T  35522974 aaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgta 35522909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 40846115 - 40846213
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    |||||||| |||||||||||| ||||  | |||||| |||||||||||||| |||||| |||||||    ||||||||| | |||||||||||||||||    
T  40846115 aaagtgtatttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 46374812 - 46374902
Alignment:
Q  9 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgt----acacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||| |||||||||     ||||||||| | | |||||||||||||||    
T  46374812 cttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 38267138 - 38267039
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||| ||||||| | |||||||||| |||||    
T  38267138 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactca 38267039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 7389487 - 7389389
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || ||||||||||||||||||||||||||| |||||    ||||||||||| | |||||||||| ||||    
T  7389487 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactc 7389389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 21234491 - 21234399
Alignment:
Q  9 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactcat 97  Q
    ||||||||||||  || |||| || ||||| ||||||||||| |||||||||||||||    ||||||||| | | |||||||||||||||||    
T  21234491 cttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactcat 21234399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 27744336 - 27744375
Alignment:
Q  26 tggccacatgtcagatttttgtgtgggtgtcaaagggtgt 65  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  27744336 tggccacatgtcagatttttgtgtgggtatcaaagggtgt 27744375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 8080385 - 8080483
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || |||||||||||| ||| ||||||||||||||||    ||||||||||| | |||||||||| ||||    
T  8080385 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 8080483  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 26296734 - 26296644
Alignment:
Q  9 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||| |||||||||| | |||||||||| ||||| ||| ||||||| ||    ||||||||| | | |||||||||||||||    
T  26296734 cttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataactc 26296644  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 36361915 - 36362013
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| |||||| |||||| |  || | || |||||||||||||||||||||||||||| ||||    ||||||||||| | |||||||||| ||||    
T  36361915 aaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactc 36362013  T

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Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 36362124 - 36362026
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| |||||| |||||| |  || | || |||||||||||||||||||||||||||| ||||    ||||||||||| | |||||||||| ||||    
T  36362124 aaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactc 36362026  T

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Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 19329940 - 19329839
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| |  ||   || |||||||||||||||||||||||||| ||||||    ||||||||| | | |||||||||| |||||    
T  19329940 aaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactca 19329841  T
Q  97 tg 98  Q
    ||    
T  19329840 tg 19329839  T

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Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35137631 - 35137531
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    |||||||  |||||||||||| |  || | || ||| |||||||||||||||||||||||||||||    ||||||||||| | ||| |||||| |||||    
T  35137631 aaagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactca 35137532  T
Q  97 t 97  Q
    |    
T  35137531 t 35137531  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3434660 - 3434595
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||||||| || |  || | || |||||| ||||||||||||||||||||||||||    
T  3434660 aaagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgta 3434595  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 3694465 - 3694400
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||||||| || | ||| | || |||||||||||||||||||||| ||| ||||||    
T  3694465 aaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgta 3694400  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 38837315 - 38837217
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||| |||||  |||||||||    ||||||||||| | |||||||||| ||||    
T  38837315 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcattactc 38837217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 43317547 - 43317592
Alignment:
Q  10 ttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgt 55  Q
    ||||| |||||||| || ||||||||||||| ||||||||||||||    
T  43317547 ttgtgtggggtctagattgccacatgtcagaattttgtgtgggtgt 43317592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 46033831 - 46033901
Alignment:
Q  29 ccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    |||| |||||||||||| ||||||||| ||||||||||    ||||||||  ||| |||||||||||||||    
T  46033831 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactc 46033901  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 3784093 - 3784000
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 90  Q
    ||||||| |||||||||| || |  || | || |||||||||||||||||||||||||| | ||||    ||||||||||| | ||||||||||    
T  3784093 aaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 3784000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 19436222 - 19436254
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    |||||||||||||||||||||||||| ||||||    
T  19436222 tgtcagatttttgtgtgggtgtcaaaaggtgta 19436254  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 19670718 - 19670816
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||    ||||||||||| |||||||||||||||||    
T  19670718 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 19670816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 47986306 - 47986208
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || ||||    ||||||||||| |||||||||||||||||    
T  47986306 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataactc 47986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 55475289 - 55475191
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    ||||||||| | |||||||||||||||||    
T  55475289 aaagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactc 55475191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17983745 - 17983810
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  17983745 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgta 17983810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 32767056 - 32766958
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||||    |||||||| || |||||||||||||||||    
T  32767056 aaagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataactc 32766958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 50813894 - 50813992
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||| |||||||    |||||||| || |||||||||||||||||    
T  50813894 aaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataactc 50813992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 29547961 - 29548059
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| || ||||    ||||||||| | |||||||||||||||||    
T  29547961 aaagtgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactc 29548059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 18924497 - 18924597
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||||||||||||| ||  |||| |||||||||||||||||||||||| | |||| |||||||    |||||||||||||||||| |||||||||||    
T  18924497 aaagtgtacttgtgcggagttcatattgccacatgtcagatttttgtgtggatatcaaggggtgtattgccacctaagggtatttatggatcataactca 18924596  T
Q  97 t 97  Q
    |    
T  18924597 t 18924597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 29589742 - 29589831
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta---cacctaagggtatttatgtat 87  Q
    |||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| |||||||   || |||||||| |||||||||    
T  29589742 aaagtgtacttgtgtggggtccatatggccacatatcagatttttgtgtgggtgtcaaggggtgtattgcaactaagggtgtttatgtat 29589831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 55079715 - 55079814
Alignment:
Q  1 aaagtgtacttgtgcgggg-tctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    |||||||||||||| |||| || ||||||||||||||||||||||||| ||||||||||  ||||||    ||||||||||| |||||||||||||||||    
T  55079715 aaagtgtacttgtgtgggggtccatatggccacatgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 8343165 - 8343263
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||    ||||||||| | |||||||||||||||||    
T  8343165 aaagtatacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 44536748 - 44536845
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||| || |||||||||||| ||||||||||||||||||||||| |||| |||||||||    |||||||  || |||||||||||||||||    
T  44536748 aaagtgtacttatgtggggtctatatgaccacatgtcagatttttgtgtggatgtc-aagggtgtattgccacctaaaagtgtttatgtatcataactc 44536845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 6034142 - 6034043
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| |||||||||| || |  || | ||||||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||| |||||    
T  6034142 aaagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 6034043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 31910290 - 31910191
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| || |||| |  ||||||||||||||||||||||||||| |||||    ||||||||| | | ||||||||||||||||    
T  31910290 aaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactca 31910191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 11511464 - 11511563
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| |  || | || |||||||||||| ||||||||||||||||||||    ||||||||||| | |||||||||| |||||    
T  11511464 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 11511563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 40574844 - 40574777
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactcat 97  Q
    |||||||||||||||||||||||||||||||||    ||||||||| | | |||||||||||||||||    
T  40574844 tgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactcat 40574777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 480449 - 480547
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||| ||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||| ||||    
T  480449 aaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 480547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 48183051 - 48183116
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    
T  48183051 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 48183116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 50052430 - 50052495
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    
T  50052430 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 50052495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 54473535 - 54473634
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| |  || | || ||| |||||||||||||||||||||| ||||||    ||||||||||| | |||||||||| |||||    
T  54473535 aaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactca 54473634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 29977983 - 29977918
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||| |||||| ||||| | || |||||||||||||||||||||| || |||||||    
T  29977983 aaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgta 29977918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 41236445 - 41236347
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||| ||||||| ||||||    ||||||||||| | |||||||||| ||||    
T  41236445 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 50526201 - 50526238
Alignment:
Q  29 ccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    |||| |||||||||||||||||||||||||||||||||    
T  50526201 ccacgtgtcagatttttgtgtgggtgtcaaagggtgta 50526238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 41823980 - 41823920
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagg 61  Q
    ||||||| ||||||||||||| || || | || |||||||||||||||||||||| |||||    
T  41823980 aaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgggtgttaaagg 41823920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 3481719 - 3481652
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactcat 97  Q
    ||||||||||||||||||||||||||| |||||    ||||||| ||| | |||||||||| ||||||    
T  3481719 tgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactcat 3481652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 18769203 - 18769142
Alignment:
Q  5 tgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    |||| ||||| ||||| || ||| |||| |||||||||||||||||||||| | ||||||||    
T  18769203 tgtatttgtgtggggtttacatgaccacgtgtcagatttttgtgtgggtgttagagggtgta 18769142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 42044369 - 42044467
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || ||||||||||||||||||||||  |||| ||||    ||||||||||| | |||||||||| ||||    
T  42044369 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcattactc 42044467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 23608300 - 23608268
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    |||||||||||||||||||||||||| ||||||    
T  23608300 tgtcagatttttgtgtgggtgtcaaatggtgta 23608268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 56300189 - 56300225
Alignment:
Q  23 atatggccacatgtcagatttttgtgtgggtgtcaaa 59  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  56300189 atatgaccacatgtcagatttttgtgtggatgtcaaa 56300225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36331331 - 36331394
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtg 64  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  36331331 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtg 36331394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 45058555 - 45058653
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||| |||||||||| |||||||||    ||||||||||| ||||||||||||||||||    
T  45058555 aaagtatacttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtc-aagggtgtattgccacctaagggtgtttatgtatcataactca 45058653  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 51419362 - 51419427
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||||| ||||    
T  51419362 aaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgta 51419427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 26141534 - 26141634
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| |||||| |||||| || || |||| |||||||||||||||||||||| ||||||||||    ||||||||| | | ||||||||||||||||    
T  26141534 aaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactca 26141633  T
Q  97 t 97  Q
    |    
T  26141634 t 26141634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 53982109 - 53982009
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||| |||||    
T  53982109 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactca 53982010  T
Q  97 t 97  Q
    |    
T  53982009 t 53982009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 8076491 - 8076393
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| |  || | || ||| |||||||||||||||||||||||||||||    ||||||||||| |||||||||||| ||||    
T  8076491 aaagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27714893 - 27714958
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| ||||||||||||| | ||| | || |||||||||||||||||||||||||||||||||    
T  27714893 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 27714958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31456787 - 31456722
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| ||||||||||||| | ||| | || |||||||||||||||||||||||||||||||||    
T  31456787 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgta 31456722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 20764917 - 20765016
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||| ||||||| || ||||||| |||||||||||||||||||||| |||| |||||    ||||||||| | | ||||| ||||||||||    
T  20764917 aaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataactca 20765016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 26754785 - 26754698
Alignment:
Q  9 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataa 92  Q
    ||||||||||||| || || ||||||||||||||||||||||| |||| |||||||||    ||||||||||| | |||| |||||||    
T  26754785 cttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatcataa 26754698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 33644298 - 33644199
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactca 96  Q
    ||||||| ||||||||||||| |  || | || |||||||||||||||||||||||||||||||||    |||| |||||| | |||||||||| |||||    
T  33644298 aaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactca 33644199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 42823209 - 42823114
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataa 92  Q
    ||||| ||||| ||||||||| ||||| |||||||||| |||||| |||||||||||| |||||||    ||| ||| ||| ||||||||||||||    
T  42823209 aaagtatacttatgcggggtccatatgaccacatgtcaaatttttttgtgggtgtcaaggggtgtattaccacataatggtgtttatgtatcataa 42823114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 11347924 - 11348022
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||| ||| ||||| || ||||||| |||||||||||||||||| ||||||||| ||||    ||||||||| | | |||||||||||||||    
T  11347924 aaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactc 11348022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 11907461 - 11907371
Alignment:
Q  9 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||||||||| ||||| |||||||||||||||||||||| ||||  | | |||||    ||||||||||| | |||||||||||||||    
T  11907461 cttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcataactc 11907371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 41189766 - 41189864
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||||| ||||||||||||| || ||||||| ||||| |||||| ||||||||||||| | ||||    ||||||||| | | |||||||||||||||    
T  41189766 aaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataactc 41189864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 52629398 - 52629304
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcata 91  Q
    ||||||| ||||| ||||||| |  || | || |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||||    
T  52629398 aaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcata 52629304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 11095388 - 11095453
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||| ||||    
T  11095388 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11095453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 30801743 - 30801828
Alignment:
Q  9 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 90  Q
    |||||| |||||| ||||| | |||||||| |||||||||||||| ||||||||||||    ||||||||||| | ||||||||||    
T  30801743 cttgtgtggggtccatatgactacatgtcatatttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcat 30801828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 33118886 - 33118951
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    ||||| |||||||||||||||||||||||||||    ||||||||||| | |||||||||||||||    
T  33118886 tgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactc 33118951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 36707459 - 36707524
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    |||||||||||||||||| ||||||||||||||    ||||||||||||| |||||||||| ||||    
T  36707459 tgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactc 36707524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 48587093 - 48587186
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcat 90  Q
    |||||||||||||||||| || |  || | || |||||||||||| ||| ||||||||||||||||    ||||||||||||| ||||||||||    
T  48587093 aaagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcat 48587186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 49607479 - 49607414
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    |||||||||||||||||||||||||||||||||    ||||||||||| | |||||||||| ||||    
T  49607479 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 49607414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 25395344 - 25395387
Alignment:
Q  10 ttgtgcggggtctatatggccacatgtcagatttttgtgtgggt 53  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||    
T  25395344 ttgtgtggggtctatatagccacatgtcagatttttgtgtgggt 25395387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 47531963 - 47531898
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| ||||||||||||  |||||||||| ||||||||| |||||||| ||| ||| ||||||    
T  47531963 aaagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgta 47531898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 54868930 - 54868995
Alignment:
Q  34 tgtcagatttttgtgtgggtgtcaaagggtgta----cacctaagggtatttatgtatcataactc 95  Q
    |||||||||||||||||||||||||| ||||||    ||||||||||| | |||||||||| ||||    
T  54868930 tgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 54868995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 613070 - 613108
Alignment:
Q  272 tatgacgttttcatcagttttcgaggcgaagatactcgc 310  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  613070 tatgacgttttcatcagtttcagaggcgaagatactcgc 613108  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14623841 - 14623906
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    ||||||| |||||| | |||| | |||  |||||||||||||||| |||||||||||| |||||||    
T  14623841 aaagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgta 14623906  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 41080778 - 41080742
Alignment:
Q  29 ccacatgtcagatttttgtgtgggtgtcaaagggtgt 65  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  41080778 ccacatatcagatttttgcgtgggtgtcaaagggtgt 41080742  T

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Target: scaffold0018 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 152596 - 152531
Alignment:
Q  1 aaagtgtacttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtcaaagggtgta 66  Q
    |||||||| ||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||    
T  152596 aaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgta 152531  T

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Target: scaffold0316 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 17144 - 17097
Alignment:
Q  9 cttgtgcggggtctatatggccacatgtcagatttttgtgtgggtgtc 56  Q
    ||||||||||||| || || ||||||||||||||||||||||| ||||    
T  17144 cttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtc 17097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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