View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_high_13 (Length: 437)
Name: NF20963_high_13
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 36945732 - 36945312
Alignment:
| Q |
1 |
tttagccacatttattc-atactaataagcttgaactactagaatatgactatagcttatgaatttgataactatcggcaatattctagtaatgcagaaa |
99 |
Q |
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||||||||||||||| | ||||||||||||||| |||| |||| |||||||| |||||||||||||||||||||| | || ||||||||||||||||||| |
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| T |
36945732 |
tttagccacatttatcccatactaataagcttgcactattagagtatgactacagcttatgaatttgataactattgacagtattctagtaatgcagaaa |
36945633 |
T |
|
| Q |
100 |
gataacaaaatcacaaagttatcttgtactaagcatttaagttggaaaagttataaggaaagaagagaagtgtgacctgttgggcgaggtgtatgcaaaa |
199 |
Q |
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||||||| ||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| |
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| T |
36945632 |
gataacacaatgacaaaattatcttgcactaagcatttaggttggaaaagttataaggaaagaagagaagcatgacctgttgggtgaggtatatgcaaaa |
36945533 |
T |
|
| Q |
200 |
tcaatccaagacagtccgttccaaaataaaatccttccatcagcaacaccggtgtaagggccacgatcatgagaatcgaaggcaatgctctccggtccct |
299 |
Q |
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| T |
36945532 |
tcaatccaagacagtccattccaaaacaaaatccttccatcagcaacaccggtgtaagggccacgaccatgagaatcgaaggcaatgctctccggtccct |
36945433 |
T |
|
| Q |
300 |
gcacttggttcaaaatcatgagctccgatttctgcaacaagttgtctttgtcatgttccataggaacttcagaccatgatggcaagttaatgttgtgcac |
399 |
Q |
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|||||||||||| || |||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
36945432 |
gcacttggttcacaaacatgagctccgatttcagcaacaagttgtctttgtcatgatccagaggaacttcagaccatgatggcaagttaattttgtgcac |
36945333 |
T |
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| Q |
400 |
ctcaaagtcagggaagccttg |
420 |
Q |
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| T |
36945332 |
ctcaaaatcagggaagccttg |
36945312 |
T |
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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 339
Target Start/End: Original strand, 17769858 - 17770023
Alignment:
| Q |
174 |
acctgttgggcgaggtgtatgcaaaatcaatccaagacagtccgttccaaaataaaatccttccatcagcaacaccggtgtaagggccacgatcatgaga |
273 |
Q |
| |
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||||||||||||| ||||| ||||| |||| |||||| ||||| ||||| || ||||| || |||||||||||||| || ||||| |||||| || ||| |
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| T |
17769858 |
acctgttgggcgaagtgtaagcaaagtcaacccaagaaagtccattccagaacaaaattctaccatcagcaacaccagtataaggaccacgaccaagagg |
17769957 |
T |
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| Q |
274 |
atcgaaggcaatgctctccggtccctgcacttggttcaaaatcatgagctccgatttctgcaacaa |
339 |
Q |
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|| || |||||||||| ||||| || ||||||||||||| | | | ||| ||||| |||||||| |
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| T |
17769958 |
gtcaaacacaatgctctcaggtccttgtacttggttcaaaaaccttatctctgatttttgcaacaa |
17770023 |
T |
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