View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_high_15 (Length: 433)
Name: NF20963_high_15
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Complemental strand, 43076621 - 43076212
Alignment:
| Q |
19 |
tgtatgacattgtgttacaatgggattttgtagaacaagaagaagtaataaaacatagaaaatgaaattcatgtttgaagtattattcttagaaagaaag |
118 |
Q |
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| T |
43076621 |
tgtatgacattgtgttacaatgggattttgtagaacaagaagaagtaataaaacatagaaaatgaaattcatgtttgaagtattattcttagaaagaaag |
43076522 |
T |
|
| Q |
119 |
aatgttacaaacaaaagaaaaatgtaggtggagaatgtgatttggaactatacaaaaattggcttgtgtcatggttttatatacaagttatgttattcag |
218 |
Q |
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| T |
43076521 |
aatgttacaaacaaaagaaaaatgtaggtggagaatgtgatttggaactatacaaaaattggcttgtgtcatggttttatatacaagttatgttattcag |
43076422 |
T |
|
| Q |
219 |
gtgggaccatatattaactgaagctgaatcagagaatcatttacagagagatagatagataggtcacgggtgcattgcatctattgatatatgttcaaag |
318 |
Q |
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| T |
43076421 |
gtgggaccatatattaagtgaagctgaatcagagaatcatttacagagagatagatagataggtcacgggtgcattgcatctattgatatatgttcaaag |
43076322 |
T |
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| Q |
319 |
aaattaagagagatgaacaatctaaattctaaaccacaggcacgggacatgttgcactttttgttcataaaattgttcttttaatattttttgttttggt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43076321 |
aaattaagagagatgaacaatctaaattctaaaccacaggcacaggacatgttgcactttttgttcataaaattgttcttttaatattttttgttttggt |
43076222 |
T |
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| Q |
419 |
tcatctcact |
428 |
Q |
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| T |
43076221 |
tcatgtcact |
43076212 |
T |
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