View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_high_18 (Length: 416)
Name: NF20963_high_18
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 47406464 - 47406062
Alignment:
| Q |
1 |
acctagatcacaaattgaattgattcagcattaacaaaacaagaaaatgttgaataatatcacagtgaaatgaagggaattaacctttgctttaaaactc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47406464 |
acctagatcacaaattgaattgattcagcattaacaaaacaagaaagtgttgaataatatcacagtgaaatgaagggaattaacctttgctttaaaactc |
47406365 |
T |
|
| Q |
101 |
cacggaagccaggaaggttggaaatgtagcaggtgatgccaacatcgtgttcttccatagaattcatggtgagcgagtgagggagtgagtggtaactgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47406364 |
cacggaagccaggaaggttggaaatgtagcaggtgatgccaacatcgtgttcttccatagaattcatggtgagcgagtgagggagtgagtggtaactgct |
47406265 |
T |
|
| Q |
201 |
acgtgctgctgcagttgcatataaggtattcgacgattttcctcgaaaacgcgccggttttatttgcaaaattgtgtcgtgactccattttgggtttgtg |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |
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| T |
47406264 |
acgtgcagctgcagttgcatataaggtattcgacgattttcctcgaaaacgcgccggttttatttgtaaaattgtgtcgtaactcctttttgggtttgtg |
47406165 |
T |
|
| Q |
301 |
aaattaaacc---nnnnnnnnnncgttggtattagcaccatattttttgttaatacaccaccctgtatggtgcttgaaatttttcccacttatgggatta |
397 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47406164 |
aaattaaaccaaaaaaaaaaaaacgttggtattagcaccatattttttgttaatacaccaccctgtatggtgcttgaaatttttcccacttatgggatta |
47406065 |
T |
|
| Q |
398 |
gtg |
400 |
Q |
| |
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||| |
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| T |
47406064 |
gtg |
47406062 |
T |
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