View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_high_20 (Length: 402)
Name: NF20963_high_20
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 222 - 373
Target Start/End: Complemental strand, 14992689 - 14992538
Alignment:
| Q |
222 |
caaaagaaaatgtactaatagtttctttgaacggaaagatatgttgattacacggtctacttggttgttattttagatataataaagttcaatacataag |
321 |
Q |
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| T |
14992689 |
caaaagaaaatgtactaatagtttctttgaacggaaagatatgttgattacacggtctacttggttgttattttagatataataaagttcaatacataag |
14992590 |
T |
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| Q |
322 |
tccattcactagataatatttgtagtgatgaatgtgagatttctatgggata |
373 |
Q |
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| T |
14992589 |
tccattcactagatcatttttgttgtgatgaatgtgagatttccatgagata |
14992538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 14993093 - 14992994
Alignment:
| Q |
97 |
attgaaattgtaggagaccctttcattaaaggttggtgatttgtttattctctacgaatagcgtagctcaataaataaacacattgagcataatatatgt |
196 |
Q |
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| T |
14993093 |
attgaaattgtaggagaccctttcattaaaggttgatgatttgtttattctctacgaatagcgtagctcaataaataa--acattgagcataatatatgt |
14992996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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