View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_high_24 (Length: 377)
Name: NF20963_high_24
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 19142310 - 19142655
Alignment:
| Q |
18 |
aaaagtataaatttgtatccacaaggactgtttcaatttccactacgcaatgtcgttattacctttaatcaatcccttaagtcagagttctcttcataga |
117 |
Q |
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| T |
19142310 |
aaaagtataaatttgtattcagaaggactgtttcaatttccactaggcaatgttgttattacttttgatcaatcccttaagtcagagttctcttcataga |
19142409 |
T |
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| Q |
118 |
ttacagttccctaacatttcttaaaccatcatgcgttcctagactgacaattttaattaaatagttaaattagatctgagtttaaaaggtatggttagta |
217 |
Q |
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||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| |
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| T |
19142410 |
ttagagttccctaacatttcttaaaccatcatgctttcctagactgacaattttaattaaatagttaaattagataa-agtttaaaaggtatgatcagta |
19142508 |
T |
|
| Q |
218 |
gttattcaatctttgaaatcaatttaaatatgattaggatataaaaggcattgcacacaaattaaattgaataaaactagatttgcattatcaaagatag |
317 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19142509 |
gttattcaatctttgcaatcaattaaaatatgattaggatataaaaggcattgcacacaaattaaattgaataaaactagatttgcattatcaaatatag |
19142608 |
T |
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| Q |
318 |
tgtttcattgtcaatatgatccaaatagattcaacaatattcatctc |
364 |
Q |
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| T |
19142609 |
tgtttcatagtcaatatgatccaaatagattcaacaatattcatctc |
19142655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 208 - 324
Target Start/End: Complemental strand, 19140591 - 19140475
Alignment:
| Q |
208 |
atggttagtagttattcaatctttgaaatcaatttaaatatgattagg-atataaaaggcattgcacacaaattaaattgaataaaactagatttgcatt |
306 |
Q |
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| T |
19140591 |
atggttagtagtcgttccatctttgaaatcaatttatatatgatcaaacatataaaaa-cattgcacccaaattaaactaaataaaactagatatgtatt |
19140493 |
T |
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| Q |
307 |
atcaaagatagtgtttca |
324 |
Q |
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|||||| ||||| ||||| |
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| T |
19140492 |
atcaaaaatagtatttca |
19140475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 39023507 - 39023619
Alignment:
| Q |
180 |
agttaaattagatctgagtttaaaaggtatggttagtagttattcaatctttgaaatcaatttaaatatgattaggatataaaaggcattgcacacaaat |
279 |
Q |
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|||| |||||||||| |||| ||| | |||| | ||||||| ||||||||||||||||| | || || |||| | ||||||||| | ||| ||||||| |
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| T |
39023507 |
agtttaattagatctaagttgaaa-gttatgataagtagttgttcaatctttgaaatcagtctatatgtgatcaagatataaaaagaattaggcacaaat |
39023605 |
T |
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| Q |
280 |
taaattgaataaaa |
293 |
Q |
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|||||||||||||| |
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| T |
39023606 |
taaattgaataaaa |
39023619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 11188119 - 11188080
Alignment:
| Q |
83 |
taatcaatcccttaagtcagagttctcttcatagattaca |
122 |
Q |
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| T |
11188119 |
taatcaatcccttgagtcagagttctcttcttagattaca |
11188080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 28493565 - 28493617
Alignment:
| Q |
26 |
aaatttgtatccacaaggactgtttcaatttccactacgcaatgtcgttatta |
78 |
Q |
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| T |
28493565 |
aaatttgtctccatacagaccgtttcaatttctactacgcaatgtcgttatta |
28493617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 293
Target Start/End: Original strand, 7639771 - 7639894
Alignment:
| Q |
169 |
tttaattaaatagttaaattagatctgagtttaaaaggtatggttagtagttattcaatctttgaaatcaatttaaatatgattaggatataaaaggcat |
268 |
Q |
| |
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||||||| || ||||||||||||||| ||| ||| | |||| | |||||| ||||||||| |||||||| | || |||||||||| |||||||| ||| |
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| T |
7639771 |
tttaattgaacagttaaattagatctaagtctaagaactatg-tcagtagtcattcaatctatgaaatcattctatatatgattagtatataaaaaacat |
7639869 |
T |
|
| Q |
269 |
tgcacacaaattaaattgaataaaa |
293 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
7639870 |
tgcatacaaattaaattgaataaaa |
7639894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 40293386 - 40293300
Alignment:
| Q |
221 |
attcaatctttgaaatcaatttaaatatgattaggatataaaaggcattgcacacaaattaaattgaataaaactagatttgcatta |
307 |
Q |
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| T |
40293386 |
attcaatctttgaaatcaatttatatatgatcaagatataaaaagtattgcacataaattaaacataataaaactatatttgcatta |
40293300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 1192776 - 1192709
Alignment:
| Q |
216 |
tagttattcaatctttgaaatcaatttaaatatgattaggatataaaaggcattgcacacaaattaaa |
283 |
Q |
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|||| ||||||||||||||||||||||| ||||||| | |||||||| |||||||||||| ||||| |
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| T |
1192776 |
tagtcattcaatctttgaaatcaatttatatatgatcacaatataaaaaacattgcacacaacttaaa |
1192709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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