View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20963_high_26 (Length: 369)

Name: NF20963_high_26
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20963_high_26
NF20963_high_26
[»] chr7 (5 HSPs)
chr7 (11-223)||(11844087-11844299)
chr7 (240-336)||(11844346-11844442)
chr7 (336-369)||(26945508-26945541)
chr7 (336-369)||(5728897-5728930)
chr7 (340-369)||(34227893-34227922)
[»] chr6 (9 HSPs)
chr6 (7-223)||(21242973-21243189)
chr6 (7-223)||(21157296-21157512)
chr6 (7-127)||(21303949-21304070)
chr6 (82-142)||(33713651-33713711)
chr6 (44-115)||(33715455-33715526)
chr6 (336-369)||(25119100-25119133)
chr6 (337-369)||(21384784-21384816)
chr6 (23-87)||(21198037-21198101)
chr6 (187-223)||(21304104-21304140)
[»] chr3 (7 HSPs)
chr3 (336-369)||(19012579-19012612)
chr3 (336-369)||(8036794-8036827)
chr3 (340-369)||(16653495-16653524)
chr3 (340-369)||(19012390-19012419)
chr3 (341-369)||(19384380-19384408)
chr3 (337-369)||(49450489-49450521)
chr3 (337-369)||(50416475-50416507)
[»] scaffold0102 (1 HSPs)
scaffold0102 (337-369)||(33833-33865)
[»] scaffold0016 (1 HSPs)
scaffold0016 (17-139)||(46575-46695)
[»] chr5 (5 HSPs)
chr5 (340-369)||(5411773-5411802)
chr5 (336-369)||(11660787-11660820)
chr5 (340-369)||(36864065-36864094)
chr5 (337-369)||(22695557-22695589)
chr5 (337-369)||(25545589-25545621)
[»] chr4 (9 HSPs)
chr4 (340-369)||(2124562-2124591)
chr4 (340-369)||(12722955-12722984)
chr4 (340-369)||(53526469-53526498)
chr4 (341-369)||(4169445-4169473)
chr4 (337-369)||(6841816-6841848)
chr4 (337-369)||(8165757-8165789)
chr4 (337-369)||(17109714-17109746)
chr4 (337-369)||(30779338-30779370)
chr4 (337-369)||(33883289-33883321)
[»] chr2 (3 HSPs)
chr2 (340-369)||(20194044-20194073)
chr2 (340-369)||(34726813-34726842)
chr2 (337-369)||(12449049-12449081)
[»] chr1 (5 HSPs)
chr1 (340-369)||(12070627-12070656)
chr1 (340-369)||(32595102-32595131)
chr1 (337-369)||(10974628-10974660)
chr1 (337-369)||(31763990-31764022)
chr1 (337-369)||(42133939-42133971)
[»] scaffold0516 (1 HSPs)
scaffold0516 (337-369)||(1265-1297)
[»] scaffold0249 (1 HSPs)
scaffold0249 (337-369)||(23539-23571)
[»] chr8 (5 HSPs)
chr8 (337-369)||(15809857-15809889)
chr8 (337-369)||(23567660-23567692)
chr8 (337-369)||(34343468-34343500)
chr8 (337-369)||(35448627-35448659)
chr8 (341-369)||(39023016-39023044)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 11844087 - 11844299
Alignment:
Q  11 ttattcgggttcaatcatactccctaattgatatcaaattgataaaagatggttgtccagaggagcatcaatccttttaactcgtcaaggatattcatag 110  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11844087 ttattcgggttcaatcagactccctaattgatatcaaattgattaaagatggttgtccagagaagcatcaatccttttaactcgtcaaggatattcatag 11844186  T
Q  111 gatctataacgacgaagacacaatcatgtggagttatatttgtaaagaagcaaatcaagtgacagaaacattgtcattctttaaatgataattgcattgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11844187 gatctataacgacgaagacacaatcatgtggagttatatttgtaaagaagcaaatcaagtgacagaaacattgtcattctttaaatgataattgcattgt 11844286  T
Q  211 ttttaactcagtt 223  Q
    |||||||||||||    
T  11844287 ttttaactcagtt 11844299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 240 - 336
Target Start/End: Original strand, 11844346 - 11844442
Alignment:
Q  240 tgtttagggtaacatctacaatatttcatgattacttatgaggatccaaatattggtccatatagattacaaaaccagtaaggtggtgtagaaaccg 336  Q
    ||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11844346 tgtttagtgtgacatctacaatatttcatgataacttatgaggatccaaatattggtccatatagattacaataccagtaaggtggtgtagaaaccg 11844442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 26945508 - 26945541
Alignment:
Q  336 gggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||||||    
T  26945508 gggctgcggttatggtgcataaggaaattcttat 26945541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 5728930 - 5728897
Alignment:
Q  336 gggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||| ||||||||||    
T  5728930 gggctgcggttatggtgcataagaaaattcttat 5728897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 34227922 - 34227893
Alignment:
Q  340 tgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||    
T  34227922 tgcggttatggtgcataaggaaattcttat 34227893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 21243189 - 21242973
Alignment:
Q  7 aggcttattcgggttcaatcatactccctaattgatatcaaattgataaaagatggttgtccagaggagcatcaatccttttaactcgtcaaggatattc 106  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||||  ||||| |||||||| | |||||| | |||||  | |||||||    
T  21243189 aggcatattcgggttgaatcagactccctaattgatatcaaattgattaaagatggccgtccaaaggagcattagtcctttcacctcgtacatgatattc 21243090  T
Q  107 ataggatctataacgacgaagacacaatcatgtggagttatatttgtaaagaagcaaatcaagtgacagaaacattgtcattctttaaatgataattgca 206  Q
    |||||||||||||||| ||||  || ||||||||||  |||||||| ||||| |||||  ||||| |  |||||||||| ||||||||||||||||||||    
T  21243089 ataggatctataacgatgaaggtacgatcatgtggaactatatttgcaaagaggcaaactaagtggccaaaacattgtctttctttaaatgataattgca 21242990  T
Q  207 ttgtttttaactcagtt 223  Q
    |||||||||||||||||    
T  21242989 ttgtttttaactcagtt 21242973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 21157296 - 21157512
Alignment:
Q  7 aggcttattcgggttcaatcatactccctaattgatatcaaattgataaaagatggttgtccagaggagcatcaatccttttaactcgtcaaggatattc 106  Q
    |||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||||  ||||| |||||||| | |||||| | ||| |  | |||||||    
T  21157296 aggcatattcgggttgaatcagactccctaattgatatcaaattgattaaagatggccgtccaaaggagcattagtcctttcacctcatacatgatattc 21157395  T
Q  107 ataggatctataacgacgaagacacaatcatgtggagttatatttgtaaagaagcaaatcaagtgacagaaacattgtcattctttaaatgataattgca 206  Q
    |||||||||||||||| ||||  || ||||||||||  |||||||| ||||| |||||  ||||| |  |||||||||| ||||||||||||||||||||    
T  21157396 ataggatctataacgatgaaggaacgatcatgtggaactatatttgcaaagaggcaaactaagtggccaaaacattgtctttctttaaatgataattgca 21157495  T
Q  207 ttgtttttaactcagtt 223  Q
    |||||||||||||||||    
T  21157496 ttgtttttaactcagtt 21157512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 21303949 - 21304070
Alignment:
Q  7 aggcttattcgggttcaatcatactccctaattgatatcaaat-tgataaaagatggttgtccagaggagcatcaatccttttaactcgtcaaggatatt 105  Q
    |||| |||| ||||||||||| |||||||||||| |||||||  |||| |||||||| |||||| ||||| |||| | |||| |||||||| | ||||||    
T  21303949 aggcatatttgggttcaatcagactccctaattggtatcaaaactgattaaagatggctgtccaaaggagtatcagttctttcaactcgtccaagatatt 21304048  T
Q  106 cataggatctataacgacgaag 127  Q
     | |||||||||||| ||||||    
T  21304049 taaaggatctataacaacgaag 21304070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 33713651 - 33713711
Alignment:
Q  82 tccttttaactcgtcaaggatattcataggatctataacgacgaagacacaatcatgtgga 142  Q
    |||||| |||||||| |||| |||||||||||||||||||||| || ||| ||||||||||    
T  33713651 tcctttcaactcgtccaggacattcataggatctataacgacgcaggcacgatcatgtgga 33713711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 33715455 - 33715526
Alignment:
Q  44 tcaaattgataaaagatggttgtccagaggagcatcaatccttttaactcgtcaaggatattcataggatct 115  Q
    ||||| |||| |||||||||| |||| |||||||  | |||||| |||||||| ||||||||||||||||||    
T  33715455 tcaaactgattaaagatggttatccaaaggagcactagtcctttcaactcgtccaggatattcataggatct 33715526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 25119100 - 25119133
Alignment:
Q  336 gggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||||||    
T  25119100 gggctgcggttatggtgcataaggaaattcttat 25119133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 21384784 - 21384816
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    |||||||||||||||||||||||||||||||||    
T  21384784 ggctgcggttatggtgcataaggaaattcttat 21384816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 21198037 - 21198101
Alignment:
Q  23 aatcatactccctaattgatatcaaattgataaaagatggttgtccagaggagcatcaatccttt 87  Q
    ||||||||||| |||||  ||||||| |||| ||||||| ||||||| ||||| |||| ||||||    
T  21198037 aatcatactccttaattactatcaaactgattaaagatgcttgtccaaaggagtatcagtccttt 21198101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 21304104 - 21304140
Alignment:
Q  187 ttctttaaatgataattgcattgtttttaactcagtt 223  Q
    |||||||||||||||||||||||||||| | ||||||    
T  21304104 ttctttaaatgataattgcattgttttttattcagtt 21304140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 336 - 369
Target Start/End: Complemental strand, 19012612 - 19012579
Alignment:
Q  336 gggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||||||    
T  19012612 gggctgcggttatggtgcataaggaaattcttat 19012579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 8036794 - 8036827
Alignment:
Q  336 gggctgcggttatggtgcataaggaaattcttat 369  Q
    |||||||||||||||||||||||||||| |||||    
T  8036794 gggctgcggttatggtgcataaggaaatccttat 8036827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Original strand, 16653495 - 16653524
Alignment:
Q  340 tgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||    
T  16653495 tgcggttatggtgcataaggaaattcttat 16653524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Original strand, 19012390 - 19012419
Alignment:
Q  340 tgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||    
T  19012390 tgcggttatggtgcataaggaaattcttat 19012419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Original strand, 19384380 - 19384408
Alignment:
Q  341 gcggttatggtgcataaggaaattcttat 369  Q
    |||||||||||||||||||||||||||||    
T  19384380 gcggttatggtgcataaggaaattcttat 19384408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 49450489 - 49450521
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    |||||||||||||||||||||||||||| ||||    
T  49450489 ggctgcggttatggtgcataaggaaattattat 49450521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 50416475 - 50416507
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  50416475 ggctgcggttatggtgcataaggaaatccttat 50416507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 33865 - 33833
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    |||||||||||||||||||||||||||||||||    
T  33865 ggctgcggttatggtgcataaggaaattcttat 33833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 46695 - 46575
Alignment:
Q  17 gggttcaatcatactccctaattgatatcaaattgataaaagatggttgtccagaggagcatcaatccttttaactcgtcaaggatattcataggatcta 116  Q
    ||||| ||||| | ||| |||||| ||||||| || | ||| ||||||||||| |||||||  | |||||| ||||||   |||||||| ||||||||||    
T  46695 gggttgaatcagaatccataattgctatcaaactggttaaatatggttgtccaaaggagcacaagtcctttcaactcgc--aggatatttataggatcta 46598  T
Q  117 taacgacgaagacacaatcatgt 139  Q
    ||| ||| |||  ||||||||||    
T  46597 taatgactaaggtacaatcatgt 46575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 5411802 - 5411773
Alignment:
Q  340 tgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||    
T  5411802 tgcggttatggtgcataaggaaattcttat 5411773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 369
Target Start/End: Original strand, 11660787 - 11660820
Alignment:
Q  336 gggctgcggttatggtgcataaggaaattcttat 369  Q
    |||||||||||||||||||||||||||| |||||    
T  11660787 gggctgcggttatggtgcataaggaaatccttat 11660820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Original strand, 36864065 - 36864094
Alignment:
Q  340 tgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||    
T  36864065 tgcggttatggtgcataaggaaattcttat 36864094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 22695589 - 22695557
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  22695589 ggctgcggttatggtgcataaggaaatccttat 22695557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 25545621 - 25545589
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  25545621 ggctgcggttatggtgcataaggaaatccttat 25545589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 2124591 - 2124562
Alignment:
Q  340 tgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||    
T  2124591 tgcggttatggtgcataaggaaattcttat 2124562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 12722984 - 12722955
Alignment:
Q  340 tgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||    
T  12722984 tgcggttatggtgcataaggaaattcttat 12722955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 53526498 - 53526469
Alignment:
Q  340 tgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||    
T  53526498 tgcggttatggtgcataaggaaattcttat 53526469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Complemental strand, 4169473 - 4169445
Alignment:
Q  341 gcggttatggtgcataaggaaattcttat 369  Q
    |||||||||||||||||||||||||||||    
T  4169473 gcggttatggtgcataaggaaattcttat 4169445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 6841816 - 6841848
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  6841816 ggctgcggttatggtgcataaggaaatccttat 6841848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 8165757 - 8165789
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  8165757 ggctgcggttatggtgcataaggaaatccttat 8165789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 17109714 - 17109746
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  17109714 ggctgcggttatggtgcataaggaaatccttat 17109746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 30779338 - 30779370
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  30779338 ggctgcggttatggtgcataaggaaatccttat 30779370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 33883289 - 33883321
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  33883289 ggctgcggttatggtgcataaggaaatccttat 33883321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 20194073 - 20194044
Alignment:
Q  340 tgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||    
T  20194073 tgcggttatggtgcataaggaaattcttat 20194044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 34726842 - 34726813
Alignment:
Q  340 tgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||    
T  34726842 tgcggttatggtgcataaggaaattcttat 34726813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 12449049 - 12449081
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  12449049 ggctgcggttatggtgcataaggaaatccttat 12449081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 12070656 - 12070627
Alignment:
Q  340 tgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||    
T  12070656 tgcggttatggtgcataaggaaattcttat 12070627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Original strand, 32595102 - 32595131
Alignment:
Q  340 tgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||||||    
T  32595102 tgcggttatggtgcataaggaaattcttat 32595131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 10974628 - 10974660
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  10974628 ggctgcggttatggtgcataaggaaatccttat 10974660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 31764022 - 31763990
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  31764022 ggctgcggttatggtgcataaggaaatccttat 31763990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 42133939 - 42133971
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  42133939 ggctgcggttatggtgcataaggaaatccttat 42133971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 1297 - 1265
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  1297 ggctgcggttatggtgcataaggaaatccttat 1265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Original strand, 23539 - 23571
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  23539 ggctgcggttatggtgcataaggaaatccttat 23571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 15809889 - 15809857
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  15809889 ggctgcggttatggtgcataaggaaatccttat 15809857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 23567692 - 23567660
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    |||| ||||||||||||||||||||||||||||    
T  23567692 ggctacggttatggtgcataaggaaattcttat 23567660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 34343500 - 34343468
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    |||||||||||||||||||||||||||| ||||    
T  34343500 ggctgcggttatggtgcataaggaaattattat 34343468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 369
Target Start/End: Complemental strand, 35448659 - 35448627
Alignment:
Q  337 ggctgcggttatggtgcataaggaaattcttat 369  Q
    ||||||||||||||||||||||||||| |||||    
T  35448659 ggctgcggttatggtgcataaggaaatccttat 35448627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 341 - 369
Target Start/End: Complemental strand, 39023044 - 39023016
Alignment:
Q  341 gcggttatggtgcataaggaaattcttat 369  Q
    |||||||||||||||||||||||||||||    
T  39023044 gcggttatggtgcataaggaaattcttat 39023016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University