View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_high_29 (Length: 354)
Name: NF20963_high_29
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_high_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 30541735 - 30542073
Alignment:
| Q |
17 |
accaaaagtacacaaaaaaccaatcatgtgctttatcttagtaaagttaatttcttttgttttataattctctgaggaatcagaatgaagtgcaataagt |
116 |
Q |
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| T |
30541735 |
accaaaagtacacaaaaaaccaatcatgtgctttatcttagtaaagttaatttcttttgttttataatcctctgaggaatcagaatgaagtgcaataagt |
30541834 |
T |
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| Q |
117 |
gaagctgataaggttaagagaaacacagtgtttagtgtnnnnnnngtgagtttttgagaattgataaaa-aatgaaaataaagcattgaaagcaagttgt |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30541835 |
gaagctgataaggttaagagaaacacagtgttcagtgtaaaaaaagtgagtttttgagaattgataaaaaaatgaaaataaagcattgaaagcaagttgt |
30541934 |
T |
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| Q |
216 |
gatgcacaaataagtgaataggttgaaacaggaagatataaaagtcctattgagtacatgaaataatcacaagctaatagaatacctaaagagaagtaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30541935 |
gatgcacaaataagtgaataggttgaaacaggaagatataaaagtcctattgagtacatgaaataatcacaagctaatagaatacctaaagagaagtaaa |
30542034 |
T |
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| Q |
316 |
ttatgataagagtgggaatagaagagtgcatagtggttt |
354 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |
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| T |
30542035 |
ttatgataagagtgtgaatagaagagtgcatagtggttt |
30542073 |
T |
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