View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_high_35 (Length: 329)
Name: NF20963_high_35
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 21180036 - 21180314
Alignment:
| Q |
8 |
gagatgaaccacttggattaacaagattggtggtaaacaagtgtgattctgagtatttcatatttaaagcaccaaatcttaaatacttcaaatattctgg |
107 |
Q |
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| T |
21180036 |
gagatgaaccacttggattaacaagattggtggtaaacaagtgtgattctgagtatttcatatttaatgcaccaaatctgaaatacttcaaatattctgg |
21180135 |
T |
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| Q |
108 |
agttgtgtttacttcagatataaatgttagggctatagaagaggtagacattgatttttctcaagaatcagaattcaatgaacgtggcaacgaactctgc |
207 |
Q |
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| T |
21180136 |
agttgtgtttacttcagatattaatgttagggctatagaagaggtagacattgatttttctcaagaatcagaattcaatgaacgtggcaacgaactctgc |
21180235 |
T |
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| Q |
208 |
caaatccttcatgatttctccgccgccaagattctaaccatttgcagttatctacttcaggtactcttttaattaattt |
286 |
Q |
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| T |
21180236 |
caaatccttcatgatttctccgccgccaatattctaactgtttgcagttatctacttcaggtactcttttaattaattt |
21180314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 290
Target Start/End: Complemental strand, 40994768 - 40994486
Alignment:
| Q |
8 |
gagatgaaccacttggattaacaagattggtggtaaacaagtgtgattctgagtatttcatatttaaagcaccaaatcttaaatacttcaaatattctgg |
107 |
Q |
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| T |
40994768 |
gagatgaaccacttggattaacaagattggtggtaaacaagtgtgatgctgagtatttcatatttaatgcaccaaatcttaaatacttcaaatattctgg |
40994669 |
T |
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| Q |
108 |
agttgtgtttacttcagatataaatgttagggctatagaagaggtagacattgatttttctcaagaatcagaattcaatgaacgtggcaacgaactctgc |
207 |
Q |
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| T |
40994668 |
ggctgtgtttacttcagatataaatgtaagggctatagaagaggtatacattgatttttctctagaatcggagtttcatgaacgtggcaatgaactctgc |
40994569 |
T |
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| Q |
208 |
caaatccttcatgatttctccgccgccaagattctaaccatttgcagttatctacttcaggtactcttttaattaatttcttg |
290 |
Q |
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| T |
40994568 |
caaatccttcatgatttctccgccgctaagattctaacagtttgcagttatctactccaggtactcttttaattaatttcttg |
40994486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 40986941 - 40986834
Alignment:
| Q |
18 |
acttggattaacaagattggtggtaaacaagtgtgattctgagtatttcatatttaaagcaccaaatcttaaatacttcaaatattctggagttgtgttt |
117 |
Q |
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| T |
40986941 |
acttgggttaaaaagaatggtgctaaacaagtgtgatacacagtgtatcaaattagatgcaccaaatcttaaattcttcaagtattctggggatgtgttt |
40986842 |
T |
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| Q |
118 |
acttcaga |
125 |
Q |
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|||||||| |
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| T |
40986841 |
acttcaga |
40986834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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