View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20963_high_4 (Length: 657)

Name: NF20963_high_4
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20963_high_4
NF20963_high_4
[»] chr6 (2 HSPs)
chr6 (43-520)||(31352473-31352972)
chr6 (519-629)||(31351756-31351865)
[»] chr8 (1 HSPs)
chr8 (94-156)||(10217199-10217261)


Alignment Details
Target: chr6 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 43 - 520
Target Start/End: Complemental strand, 31352972 - 31352473
Alignment:
Q  43 caggaatggacataaatattctactatgaacttccaaagatagcccgaacttagctagactatctgcaacttggttggcctctctcacaacatggcttat 142  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31352972 caggaatggacataaatattctactatgaacttcgaaagatagcccgaacttagctagactatctgcaacttggttggcctctctcacaacatggcttat 31352873  T
Q  143 tttaacataatcaagatccacatcaactcttcaatattcctgtccaaactgtggcaagtctgggtcagcacacaacctgagttgattgtattaactgcta 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31352872 tttaacataatcaagatccacatcaactcttcaatattcctgtccaaactgtggcaagtctgggtcagcacacaacctgagttgattgtattaactgcta 31352773  T
Q  243 aaaagaatccgattctaacaacaaatgctttaatcctttctctt----------------------aacagcccacagttcagctttaaccacagaacta 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||||||||||||||||||    
T  31352772 aaaagaatccgattctaacaacaaatgctttaatcctttctctttggctaactgcagactctaaagaacagcccacagttcagctttaaccacagaacta 31352673  T
Q  321 ggtatcaatttaacagcaaaagcccaaagaaaacaaccatttgagtccctcgcatcaccactgcctgctgctttcaaaccccacccgagaatctgcagca 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31352672 ggtatcaatttaacagcaaaagcccaaagaaaacaaccatttgagtccctcgcatcaccactgcctgctgctttcaaaccccacccgagaatctgcagca 31352573  T
Q  421 tcacagttgatttttatcagactggacagagggggagtcctcacagtaggcttcattcatcactctgctacttgaaacgtgaatattgataggcactagt 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31352572 tcacagttgatttttatcagactggacagagggggagtcctcacaataggcttcattcatcactctgctacttgaaacgtgaatattgataggcactagt 31352473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 519 - 629
Target Start/End: Complemental strand, 31351865 - 31351756
Alignment:
Q  519 gtaagtaatgtttgaccaagattgttacaaccaggattcgaacgccaggcacgttgagaccgatattaatttggaaaaaattaataattcaatgtaatta 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31351865 gtaagtaatgtttgaccaagattgttacaaccaggattcgaacgccagacacgttgagaccgatattaatttggaaaaaa-taataattcaatgtaatta 31351767  T
Q  619 ttggtgtctaa 629  Q
    |||||||||||    
T  31351766 ttggtgtctaa 31351756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 10217199 - 10217261
Alignment:
Q  94 tagctagactatctgcaacttggttggcctctctcacaacatggcttattttaacataatcaa 156  Q
    ||||||||||||| || |||||||| |||||||||| ||||||| | ||||| |||| |||||    
T  10217199 tagctagactatccgccacttggttagcctctctcaaaacatggttaattttgacatgatcaa 10217261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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