View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20963_high_42 (Length: 293)

Name: NF20963_high_42
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20963_high_42
NF20963_high_42
[»] scaffold0039 (2 HSPs)
scaffold0039 (1-171)||(90615-90785)
scaffold0039 (85-156)||(90968-91040)
[»] chr4 (12 HSPs)
chr4 (1-149)||(3220539-3220687)
chr4 (49-163)||(3221350-3221465)
chr4 (49-129)||(41952333-41952413)
chr4 (68-171)||(33570258-33570362)
chr4 (9-163)||(52869455-52869612)
chr4 (122-172)||(38983328-38983378)
chr4 (122-171)||(2713880-2713929)
chr4 (4-70)||(16989331-16989399)
chr4 (122-171)||(33569720-33569769)
chr4 (131-172)||(40847676-40847717)
chr4 (65-141)||(5825364-5825440)
chr4 (124-172)||(39844895-39844943)
[»] chr3 (8 HSPs)
chr3 (1-145)||(46185784-46185928)
chr3 (49-163)||(46186959-46187074)
chr3 (61-142)||(55477961-55478042)
chr3 (61-142)||(41885454-41885535)
chr3 (61-142)||(92861-92942)
chr3 (9-69)||(41041176-41041238)
chr3 (4-63)||(1259585-1259646)
chr3 (4-63)||(37242873-37242934)
[»] chr7 (7 HSPs)
chr7 (61-142)||(20900464-20900545)
chr7 (9-163)||(84385-84542)
chr7 (121-172)||(85085-85136)
chr7 (65-168)||(33806546-33806650)
chr7 (57-110)||(7677743-7677796)
chr7 (122-174)||(34854033-34854085)
chr7 (65-141)||(40905727-40905803)
[»] chr2 (6 HSPs)
chr2 (63-142)||(27276692-27276771)
chr2 (57-110)||(4479636-4479689)
chr2 (121-171)||(4769050-4769100)
chr2 (122-172)||(7716670-7716720)
chr2 (122-172)||(28223787-28223837)
chr2 (122-171)||(20244208-20244257)
[»] chr8 (4 HSPs)
chr8 (37-141)||(2358593-2358695)
chr8 (23-172)||(43433810-43433959)
chr8 (61-141)||(788056-788136)
chr8 (10-70)||(26579178-26579238)
[»] chr1 (4 HSPs)
chr1 (49-140)||(41465267-41465356)
chr1 (57-149)||(50267584-50267676)
chr1 (122-174)||(49534433-49534485)
chr1 (122-172)||(1403039-1403089)
[»] chr5 (7 HSPs)
chr5 (65-140)||(27645866-27645941)
chr5 (9-70)||(39148870-39148933)
chr5 (9-146)||(25074915-25075058)
chr5 (9-146)||(25132884-25133027)
chr5 (60-139)||(33283960-33284039)
chr5 (121-171)||(39149467-39149517)
chr5 (57-142)||(33001961-33002046)
[»] scaffold0041 (2 HSPs)
scaffold0041 (57-110)||(27282-27335)
scaffold0041 (65-141)||(44215-44291)
[»] scaffold0229 (1 HSPs)
scaffold0229 (122-172)||(15270-15320)


Alignment Details
Target: scaffold0039 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 90785 - 90615
Alignment:
Q  1 cgtttttaatgttgctggtggtggggaggagataacggtggtggaagatgtaaaagaaataatttagtgtggagagagtattataagaatgtgttcttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  90785 cgtttttaatgttgctggtggtggggaggagataacggtggtggaagatgtaaaagaaataatctagtgtggagagagtattataagaatgtgtttttga 90686  T
Q  101 tttgatctaaaggtccaaataaacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacc 171  Q
    ||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||| || ||||||||||||||    
T  90685 tttgatctaaaggtccaaataaactttcctatggtggaaaatgattcacctttcccatgtgaaatgccacc 90615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 90968 - 91040
Alignment:
Q  85 aagaatgtgttcttgatttgatctaaaggtccaa-ataaacttttctatggtgggaaaggattcacattttcc 156  Q
    ||||| |||||||||||||||||||||||  ||| ||||| ||| ||||||||||||||||||||| ||||||    
T  90968 aagaacgtgttcttgatttgatctaaaggatcaatataaattttcctatggtgggaaaggattcaccttttcc 91040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 3220687 - 3220539
Alignment:
Q  1 cgtttttaatgttgctggtggtggggaggagataacggtggtggaagatgtaaaagaaataatttagtgtggagagagtattataagaatgtgttcttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3220687 cgtttttaatgttgctggtggtggggaggagataacggtggtggaagatgtaaaagaaataatctagtgtggagagagtattataagaatgtgttcttga 3220588  T
Q  101 tttgatctaaaggtccaaataaacttttctatggtgggaaaggattcac 149  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  3220587 tttgatctaaaggtccaaataaactttcctatgatgggaaaggattcac 3220539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 3221350 - 3221465
Alignment:
Q  49 tgtaaaagaaataatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaa-ggtccaaataaacttttctatggtgggaaaggattc 147  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||||| | || ||||||||||||||    
T  3221350 tgtaaaagaaataatctagtgaggagagagtatcataagaatgtgttcttgatttgatctaaagggtcaatataaactttcccatcgtgggaaaggattc 3221449  T
Q  148 acattttccgtgtgaa 163  Q
    || ||| || ||||||    
T  3221450 acctttcccatgtgaa 3221465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 41952333 - 41952413
Alignment:
Q  49 tgtaaaagaaataatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaa-ggtccaaataaacttttc 129  Q
    ||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| |||| | |||||||||||    
T  41952333 tgtaaaaaaaataatt-agtgaggagagagtattataagaatgtgtttttgatttgatctaaagggtcaatataaacttttc 41952413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 33570258 - 33570362
Alignment:
Q  68 tgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaata--aacttttctatggtgggaaaggattcacattttccgtgtgaaat 165  Q
    |||||||||||||| |||| | ||| || |||||||||||||| |||  |||||  ||||||  |||||||| |||||||| || |||||| ||||||||    
T  33570258 tgtggagagagtatgataaaattgttttattgatttgatctaatggtt-aaataccaactttcttatggtggaaaaggattgaccttttccatgtgaaat 33570356  T
Q  166 gccacc 171  Q
    ||||||    
T  33570357 gccacc 33570362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 52869612 - 52869455
Alignment:
Q  9 atgttgctggtggtgggg--aggagataacggtggtggaagatgtaaaagaaataatttagtgtggagagagtattataagaatgtgttc-ttgatttga 105  Q
    |||||| |||||| ||||  |||||| || ||||||||||||||||||||||||||| |||||| |  || |||| ||||||  ||| || || |  |||    
T  52869612 atgttgttggtggcgggggaaggagagaagggtggtggaagatgtaaaagaaataatatagtgttgcaagtgtatgataagatcgtgctctttaaaatga 52869513  T
Q  106 tctaaaggtccaaataaacttttctatggtgggaaaggattcacattttccgtgtgaa 163  Q
    ||||| |||  || | |||||| | ||||||||||||||||||| ||| || ||||||    
T  52869512 tctaatggttaaagtgaactttcccatggtgggaaaggattcacctttcccatgtgaa 52869455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 38983328 - 38983378
Alignment:
Q  122 aacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacct 172  Q
    |||||||||||||||||||||  ||| |||||||| ||||||||| |||||    
T  38983328 aacttttctatggtgggaaagttttctcattttccatgtgaaatgtcacct 38983378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 2713880 - 2713929
Alignment:
Q  122 aacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacc 171  Q
    |||||||| |||||||||||||||| || ||| || ||||||||||||||    
T  2713880 aacttttccatggtgggaaaggattaacctttcccatgtgaaatgccacc 2713929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 16989399 - 16989331
Alignment:
Q  4 ttttaatgttgctggtggtggggaggagata--acggtggtggaagatgtaaaagaaataatttagtgt 70  Q
    |||| |||||| ||||||||||||||||| |  | |||||||| || |||||||||||||||| |||||    
T  16989399 ttttgatgttgttggtggtggggaggagagagaagggtggtgggaggtgtaaaagaaataattcagtgt 16989331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 33569769 - 33569720
Alignment:
Q  122 aacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacc 171  Q
    |||||||| |||||||||||||||| || ||| || ||||||||||||||    
T  33569769 aacttttccatggtgggaaaggattgacctttcccatgtgaaatgccacc 33569720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 40847717 - 40847676
Alignment:
Q  131 atggtgggaaaggattcacattttccgtgtgaaatgccacct 172  Q
    |||||||||||||||| || |||||| |||||||||||||||    
T  40847717 atggtgggaaaggattaaccttttccatgtgaaatgccacct 40847676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 5825440 - 5825364
Alignment:
Q  65 tagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtgggaaa 141  Q
    |||||| |||||||||  |||| ||||||||| | ||||||||||| |||   || ||||||| |||||||||||||    
T  5825440 tagtgttgagagagtaggataataatgtgttcctcatttgatctaatggttagaaaaaactttgctatggtgggaaa 5825364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 39844943 - 39844895
Alignment:
Q  124 cttttctatggtgggaaaggattcacattttccgtgtgaaatgccacct 172  Q
    |||| ||||||||||||||||||| | ||| || |||||||||||||||    
T  39844943 ctttcctatggtgggaaaggattcccctttcccatgtgaaatgccacct 39844895  T

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Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 46185928 - 46185784
Alignment:
Q  1 cgtttttaatgttgctggtggtggggaggagataacggtggtggaagatgtaaaagaaataatttagtgtggagagagtattataagaatgtgttcttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  46185928 cgtttttaatgttgctggtggtggggaggagataacggtggtggaagatgtaaaagaaataatatagtgtggagagagtattataaaaatgtgtttttga 46185829  T
Q  101 tttgatctaaaggtccaaataaacttttctatggtgggaaaggat 145  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||    
T  46185828 tttgatctaaaggtccaaataaactttcctatgatgggaaaggat 46185784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 46186959 - 46187074
Alignment:
Q  49 tgtaaaagaaataatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaa-ggtccaaataaacttttctatggtgggaaaggattc 147  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||| ||||||||||    
T  46186959 tgtaaaagaaataatctagtgatgagagagtattataagaatgtgttcttgatttgatctaaagggtcaatataaactttcctatggtgagaaaggattc 46187058  T
Q  148 acattttccgtgtgaa 163  Q
    || ||| || ||||||    
T  46187059 acctttcccatgtgaa 46187074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 55477961 - 55478042
Alignment:
Q  61 aatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtgggaaag 142  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||    
T  55477961 aatttagtgtggagagagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcctatggtggaaaag 55478042  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 41885535 - 41885454
Alignment:
Q  61 aatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtgggaaag 142  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| | ||||||||| | ||||||||||||    
T  41885535 aatttagtgtggagagggtattataaaaatgtgttcttgatttgatctaaaagtcaatataaactttcccatggtgggaaag 41885454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 92861 - 92942
Alignment:
Q  61 aatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtgggaaag 142  Q
    |||||||||||||||||||||| ||| | |||||||||||||||||||||||||| | ||||||||| | || |||||||||    
T  92861 aatttagtgtggagagagtattgtaaaagtgtgttcttgatttgatctaaaggtcaatataaactttcccatcgtgggaaag 92942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 41041176 - 41041238
Alignment:
Q  9 atgttgctggtggtgggg--aggagataacggtggtggaagatgtaaaagaaataatttagtg 69  Q
    |||||| |||||||||||  |||||| || ||||||||||||||||||||||||||| |||||    
T  41041176 atgttgttggtggtgggggaaggagagaagggtggtggaagatgtaaaagaaataatatagtg 41041238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 1259585 - 1259646
Alignment:
Q  4 ttttaatgttgctggtggtggggaggagata--acggtggtggaagatgtaaaagaaataat 63  Q
    |||| |||||| ||||||||||||||||| |  | ||||||||||| |||||||||||||||    
T  1259585 ttttgatgttgttggtggtggggaggagagagaagggtggtggaaggtgtaaaagaaataat 1259646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 37242873 - 37242934
Alignment:
Q  4 ttttaatgttgctggtggtggggaggagata--acggtggtggaagatgtaaaagaaataat 63  Q
    |||| |||||| ||||||||||||||||| |  | ||||||||||| |||||||||||||||    
T  37242873 ttttgatgttgttggtggtggggaggagagagaagggtggtggaaggtgtaaaagaaataat 37242934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 20900545 - 20900464
Alignment:
Q  61 aatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtgggaaag 142  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| | ||| ||||||||    
T  20900545 aatttagtgtggagagagtattataaaaatgtgttcttgatttgatctaaaggtcaatataaactttcccatgatgggaaag 20900464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 84542 - 84385
Alignment:
Q  9 atgttgctggtggtgggg--aggagataacggtggtggaagatgtaaaagaaataatttagtgtggagagagtattataagaatgtgttctt-gatttga 105  Q
    |||||| |||||||||||  |||||| || ||||||||||||||||||||||||||| |||||| |  || |||| |||||| |||| ||||  |  |||    
T  84542 atgttgttggtggtgggggaaggagagaagggtggtggaagatgtaaaagaaataatatagtgttgcaagtgtatgataagattgtgctcttcaaaatga 84443  T
Q  106 tctaaaggtccaaataaacttttctatggtgggaaaggattcacattttccgtgtgaa 163  Q
    ||||| |||  || | |||||| | || |||||||||||||||| ||| || ||||||    
T  84442 tctaatggttaaagtgaactttcccatagtgggaaaggattcacctttcccatgtgaa 84385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 85085 - 85136
Alignment:
Q  121 aaacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacct 172  Q
    ||||||||| ||||||||||||||||||| ||| || |||||||||||||||    
T  85085 aaacttttccatggtgggaaaggattcacctttcccatgtgaaatgccacct 85136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 33806546 - 33806650
Alignment:
Q  65 tagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaata--aacttttctatggtgggaaaggattcacattttccgtgtga 162  Q
    ||||||||||||||||| |||| | ||| || ||||| |||||||| |||  |||||  |||||| | |||||||||||||||| || ||| || |||||    
T  33806546 tagtgtggagagagtatgataaaattgttttattgatctgatctaatggtt-aaataccaactttccaatggtgggaaaggattgacctttcccatgtga 33806644  T
Q  163 aatgcc 168  Q
    ||||||    
T  33806645 aatgcc 33806650  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 7677743 - 7677796
Alignment:
Q  57 aaataatttagtgtggagagagtattataagaatgtgttcttgatttgatctaa 110  Q
    |||||||||||||| |||||| ||| |||||||||||||| | |||| ||||||    
T  7677743 aaataatttagtgttgagagaatatgataagaatgtgttcctcatttaatctaa 7677796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 34854033 - 34854085
Alignment:
Q  122 aacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacctgt 174  Q
    |||||| |||||||||||||||||| || ||| || ||||||||| |||||||    
T  34854033 aactttcctatggtgggaaaggattaacctttcccatgtgaaatggcacctgt 34854085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 40905727 - 40905803
Alignment:
Q  65 tagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtgggaaa 141  Q
    |||||| |||||  ||| |||| ||||||||||| ||||||||||| |||| |||| |||||| ||||  |||||||    
T  40905727 tagtgttgagagtctatgataaaaatgtgttctttatttgatctaagggtcaaaattaactttcctataatgggaaa 40905803  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 27276771 - 27276692
Alignment:
Q  63 tttagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtgggaaag 142  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| | ||||||||||| || |||||||||    
T  27276771 tttagtgtggagagagtattataattatgtgttcttgatttgatctaaaggtcaatataaacttttccatcgtgggaaag 27276692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 4479636 - 4479689
Alignment:
Q  57 aaataatttagtgtggagagagtattataagaatgtgttcttgatttgatctaa 110  Q
    ||||||||||||||||||||||||| |||||||| ||||| | |||| ||||||    
T  4479636 aaataatttagtgtggagagagtatgataagaatatgttcctcatttaatctaa 4479689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 4769050 - 4769100
Alignment:
Q  121 aaacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacc 171  Q
    ||||||| ||||||||||||||||||| | |||||| ||| ||||||||||    
T  4769050 aaactttcctatggtgggaaaggattccccttttccatgttaaatgccacc 4769100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 7716720 - 7716670
Alignment:
Q  122 aacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacct 172  Q
    |||||| | |||||||||||||||| |||||| || |||||||||||||||    
T  7716720 aactttcccatggtgggaaaggattaacatttcccatgtgaaatgccacct 7716670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 28223837 - 28223787
Alignment:
Q  122 aacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacct 172  Q
    |||||| |||||||||||||||||| || ||| || |||||||||||||||    
T  28223837 aactttcctatggtgggaaaggattaacctttcccatgtgaaatgccacct 28223787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 20244208 - 20244257
Alignment:
Q  122 aacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacc 171  Q
    |||||||| |||||||||||||||| || ||| || ||||||||||||||    
T  20244208 aacttttccatggtgggaaaggattaacctttcccatgtgaaatgccacc 20244257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 2358695 - 2358593
Alignment:
Q  37 ggtggtggaaga-tgtaaaagaaataatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggt 135  Q
    |||||||||||  |||||||||||  || ||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| |||||    
T  2358695 ggtggtggaagtgtgtaaaagaaa--atctagtgtgaagagagtattataagaatgtattcttgatttgatctaaaggtcaaaataaac-tttccatggt 2358599  T
Q  136 gggaaa 141  Q
    ||||||    
T  2358598 gggaaa 2358593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 172
Target Start/End: Complemental strand, 43433959 - 43433810
Alignment:
Q  23 ggggaggagataacggtggtggaagatgtaaaagaaataatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataa 122  Q
    |||||||||| ||  |||||| ||||||||||||||||||| |||||| |  ||  ||| |||||| ||||||||| | || |||||| ||   || | |    
T  43433959 ggggaggagagaatagtggtgaaagatgtaaaagaaataatatagtgttggaagtctatgataagattgtgttcttcaattcatctaatggctaaagtga 43433860  T
Q  123 acttttctatggtgggaaaggattcacattttccgtgtgaaatgccacct 172  Q
    ||||| | ||||||||||| ||||| | ||| || ||| |||||||||||    
T  43433859 actttcccatggtgggaaatgattcccctttcccatgttaaatgccacct 43433810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 788136 - 788056
Alignment:
Q  61 aatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtgggaaa 141  Q
    |||||||||| ||||| |||  |||| ||||||||| | ||||||||||| ||||  || ||||||| |||||||||||||    
T  788136 aatttagtgttgagagggtaggataataatgtgttcctcatttgatctaatggtcagaaaaaactttgctatggtgggaaa 788056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 26579178 - 26579238
Alignment:
Q  10 tgttgctggtggtggggaggagataacggtggtggaagatgtaaaagaaataatttagtgt 70  Q
    ||||||||||||||||||||||| || |||||||||   ||| ||||||||||| ||||||    
T  26579178 tgttgctggtggtggggaggagagaagggtggtggagtgtgtgaaagaaataatctagtgt 26579238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 41465356 - 41465267
Alignment:
Q  49 tgtaaaagaaataatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtgggaa 140  Q
    |||||||||||  || ||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||||||||||| | ||||||||||    
T  41465356 tgtaaaagaaa--atctagtgtgaagagagtattataagaatgtattcctgatttgatctaaatgtcaaaataaactttcccatggtgggaa 41465267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 50267676 - 50267584
Alignment:
Q  57 aaataatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtgggaaaggattcac 149  Q
    ||||||| ||||||||||||| ||| |||||||| |  |||| ||||||||||| ||| |||| || |||||| ||||||| |||||||||||    
T  50267676 aaataatatagtgtggagagaatatgataagaatatagtcttcatttgatctaatggttcaaacaatcttttccatggtggaaaaggattcac 50267584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 49534433 - 49534485
Alignment:
Q  122 aacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacctgt 174  Q
    |||||||| |||||||||||||||| || ||| || |||||||||||||||||    
T  49534433 aacttttccatggtgggaaaggattaacctttcccatgtgaaatgccacctgt 49534485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 1403089 - 1403039
Alignment:
Q  122 aacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacct 172  Q
    |||||| | |||||||||||||||| || |||||| |||||||||||||||    
T  1403089 aactttcccatggtgggaaaggattaaccttttccatgtgaaatgccacct 1403039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 27645941 - 27645866
Alignment:
Q  65 tagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtgggaa 140  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||  ||||||||||    
T  27645941 tagtgtgaagagagtgttataagaatgtgttcttgattttatctaaaggtcaaaacaaactttttcatggtgggaa 27645866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 39148933 - 39148870
Alignment:
Q  9 atgttgctggtggtgggg--aggagataacggtggtggaagatgtaaaagaaataatttagtgt 70  Q
    |||||| |||||||||||  |||||| || ||||||||||||||||||||||||||| ||||||    
T  39148933 atgttgttggtggtgggggaaggagagaagggtggtggaagatgtaaaagaaataatatagtgt 39148870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 25074915 - 25075058
Alignment:
Q  9 atgttgctggtggtggggagga------gataacggtggtggaagatgtaaaagaaataatttagtgtggagagagtattataagaatgtgttcttgatt 102  Q
    ||||||||||||||||||||||      || || ||||||||||| ||||||||||||||| |||||| || || |||  ||| || ||||||||| | |    
T  25074915 atgttgctggtggtggggaggaagaagagagaatggtggtggaaggtgtaaaagaaataatctagtgttgaaagtgtaccatatgattgtgttcttcaat 25075014  T
Q  103 tgatctaaaggtccaaataaacttttctatggtgggaaaggatt 146  Q
    | |||||| ||   || | |||||| | ||||||||||||||||    
T  25075015 taatctaatggctaaagttaactttcccatggtgggaaaggatt 25075058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 25132884 - 25133027
Alignment:
Q  9 atgttgctggtggtggggagga------gataacggtggtggaagatgtaaaagaaataatttagtgtggagagagtattataagaatgtgttcttgatt 102  Q
    ||||||||||||||||||||||      || || ||||||||||| ||||||||||||||| |||||| || || |||  ||| || ||||||||| | |    
T  25132884 atgttgctggtggtggggaggaagaagagagaatggtggtggaaggtgtaaaagaaataatctagtgttgaaagtgtaccatatgattgtgttcttcaat 25132983  T
Q  103 tgatctaaaggtccaaataaacttttctatggtgggaaaggatt 146  Q
    | |||||| ||   || | |||||| | ||||||||||||||||    
T  25132984 taatctaatggctaaagttaactttcccatggtgggaaaggatt 25133027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 33283960 - 33284039
Alignment:
Q  60 taatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtggga 139  Q
    ||||||||||  |||||||||| |||| ||||||||| | ||||||||||| |||| ||| || |||| | |||||||||    
T  33283960 taatttagtgatgagagagtatgataaaaatgtgttcctcatttgatctaacggtcaaaaaaacctttcccatggtggga 33284039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 39149467 - 39149517
Alignment:
Q  121 aaacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacc 171  Q
    ||||||| | ||||||||||||||||||| ||| || ||||||||||||||    
T  39149467 aaactttcccatggtgggaaaggattcacctttcccatgtgaaatgccacc 39149517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 33002046 - 33001961
Alignment:
Q  57 aaataatttagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtgggaaag 142  Q
    |||||||||||||| |||||| ||| |||||||||| ||| | |||| |||||| || |   || |||||||| ||||||||||||    
T  33002046 aaataatttagtgttgagagaatatgataagaatgtattcctcatttaatctaatggacatgatcaacttttccatggtgggaaag 33001961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 27335 - 27282
Alignment:
Q  57 aaataatttagtgtggagagagtattataagaatgtgttcttgatttgatctaa 110  Q
    |||||||||||||| |||||||||| |||||||||||||| | |||| ||||||    
T  27335 aaataatttagtgttgagagagtatgataagaatgtgttcctcatttaatctaa 27282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 44291 - 44215
Alignment:
Q  65 tagtgtggagagagtattataagaatgtgttcttgatttgatctaaaggtccaaataaacttttctatggtgggaaa 141  Q
    |||||| |||||  ||| |||| ||||||||||| ||||||||||| |||| |||| |||||| ||||  |||||||    
T  44291 tagtgttgagagtctatgataaaaatgtgttctttatttgatctaagggtcaaaattaactttcctataatgggaaa 44215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 15270 - 15320
Alignment:
Q  122 aacttttctatggtgggaaaggattcacattttccgtgtgaaatgccacct 172  Q
    |||||| | |||||||||||||||| || |||||| |||||||||||||||    
T  15270 aactttcccatggtgggaaaggattaaccttttccatgtgaaatgccacct 15320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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