View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_high_45 (Length: 272)
Name: NF20963_high_45
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 30542314 - 30542055
Alignment:
| Q |
1 |
taccatccaacaacacaagatgaacaatttgttttctatcttagccattggaaatggtggtttgcagtaatactcaacactttcttattcttgatgggtc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30542314 |
taccatccaacaacacaagatgagcaatttgttttctatcttagccattggaaatggtggtttgcagtaatactcaacactttcttatccttgatgggtc |
30542215 |
T |
|
| Q |
101 |
aatcaagtgcagttatgcttggaatattctactttgaccaaggtggaaaaagtttatggatgaacacactattacaaactattgcttttccaattctttt |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30542214 |
aatcaagtgcagttatgcttggaagattctactttgaccaaggtggaaaaagtttatggatgaacacactattacaaactattgcttttccaattctttt |
30542115 |
T |
|
| Q |
201 |
cataccacnnnnnnnatttcctcaagcaaaaaccacttttgaaaccactatgcactcttc |
260 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30542114 |
cataccactttttttatttcctcaagcaaaaaacacttttgaaaccactatgcactcttc |
30542055 |
T |
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