View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_high_48 (Length: 263)
Name: NF20963_high_48
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_high_48 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 34933422 - 34933657
Alignment:
| Q |
1 |
atatgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaag |
100 |
Q |
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| T |
34933422 |
atatgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgagtgaagcaacgattatgaaaatatgattgaaag |
34933521 |
T |
|
| Q |
101 |
agatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattcaacaaattcttctcattctacttataagaagcttcaacccaagagattacg |
200 |
Q |
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| T |
34933522 |
agatacaaacgaaaactgtcatgcaatgcaaccctagagag---------acaaattcttctcattctacttataagaagcttcaaccctagagattacg |
34933612 |
T |
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| Q |
201 |
aacgaaaactgtcatgcaatgaaaatacatagataccttggagct |
245 |
Q |
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| T |
34933613 |
aacgaaaactatcatgcaatgaaaatacatagatacgttggagct |
34933657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 34926958 - 34927146
Alignment:
| Q |
51 |
acatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattca |
150 |
Q |
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|||||||||||||| || ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34926958 |
acatagataccttgagagtgaagcaacgaatatgaaaataagattgaaagagataagaacgaaaactgtcatgcaatgcaaccctagagagacaagttca |
34927057 |
T |
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| Q |
151 |
acaaattcttctcattctacttataagaagcttcaacccaagagattacgaacgaaaactgtcatgcaatgaaaatacatagatacctt |
239 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
34927058 |
acaaattcttctcattctacgtataagaagcttcaaccctagagattacgaaaaaaaactgtcatgcaatgaaattacatagatacctt |
34927146 |
T |
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