View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_high_49 (Length: 258)
Name: NF20963_high_49
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 23805497 - 23805274
Alignment:
| Q |
16 |
tataaatgtagctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataatctcgtgtaaaaacgacagttgccaactctgnnnn |
115 |
Q |
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| T |
23805497 |
tataaatatagctacttgaatcatcttctgaaaaactattataagctcataaaaataagttataatctcgtgtaaaaacgacagttgccaactctgtttt |
23805398 |
T |
|
| Q |
116 |
nnnnnnaatcatacgagttaccaaatcttgttattattttaagcaaaattagattcaaacccaaattgacaagaatcatgtgagactttgaggagcagca |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23805397 |
ttttttaatcatacgagttaccaaatcttgttattattctaagcaaaattaggttcaaacccaaattgacaagaatcatgtgagactttgaggagcagca |
23805298 |
T |
|
| Q |
216 |
tactcccatgtcccaagttaatac |
239 |
Q |
| |
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||||||||| |||||||||||||| |
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| T |
23805297 |
tactcccatatcccaagttaatac |
23805274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 32359210 - 32359164
Alignment:
| Q |
57 |
taagctcataaaaataagttataatctcgtgtaaaaacgacagttgc |
103 |
Q |
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| T |
32359210 |
taagctcatgaaaataagctataagctcgtgtaaaaatgacagttgc |
32359164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 52831515 - 52831434
Alignment:
| Q |
25 |
agctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataatctcgtgtaaaaacgacagttgccaa |
106 |
Q |
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| T |
52831515 |
agctacttgaattagcttatcaaaaacctttataagctcatgaaaataagctacaagctcgtgtaaaaatgaccgttaccaa |
52831434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 39276415 - 39276339
Alignment:
| Q |
25 |
agctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataatctcgtgtaaaaacgacagtt |
101 |
Q |
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| T |
39276415 |
agctacttgaattagcttatcaaaaaacgttataagctagtaaaaataagttataagctcgtgagaaaatgacagtt |
39276339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 25019672 - 25019723
Alignment:
| Q |
55 |
tataagctcataaaaataagttataatctcgtgtaaaaacgacagttgccaa |
106 |
Q |
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| T |
25019672 |
tataagctcataaaaagaagttataatctcgtttaaaaataacagttaccaa |
25019723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 9004881 - 9004814
Alignment:
| Q |
25 |
agctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataatctcgtgtaaaa |
92 |
Q |
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| T |
9004881 |
agctacttgaattagcttatcaaaaaccgatataagctcatgaaaataagctataagctcgtgtaaaa |
9004814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 883799 - 883733
Alignment:
| Q |
27 |
ctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataatctcgtgtaaaaa |
93 |
Q |
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|||||||||| | ||||| | ||||| |||| |||||| |||||||||||||| |||||||||||| |
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| T |
883799 |
ctacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtgtaaaaa |
883733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 1243128 - 1243062
Alignment:
| Q |
27 |
ctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataatctcgtgtaaaaa |
93 |
Q |
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| T |
1243128 |
ctacttgaattaacttatcagaaacttctatatgctcatgaaaataagttataagctcgtgtaaaaa |
1243062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 43822588 - 43822515
Alignment:
| Q |
25 |
agctacttgaatcatcttatgaaaaactattataagctcataaaaataagttataatctcgtgtaaaaacgaca |
98 |
Q |
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|||||||||||| | ||||| |||||| | ||||| ||||| |||||||| ||||| || ||||||||| |||| |
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| T |
43822588 |
agctacttgaattagcttatcaaaaaccactataatctcatgaaaataagctataagcttgtgtaaaaatgaca |
43822515 |
T |
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