View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20963_high_5 (Length: 557)

Name: NF20963_high_5
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20963_high_5
NF20963_high_5
[»] chr8 (15 HSPs)
chr8 (188-541)||(1979293-1979647)
chr8 (11-191)||(1979060-1979240)
chr8 (308-366)||(20154076-20154133)
chr8 (308-366)||(20203337-20203394)
chr8 (308-405)||(2517108-2517209)
chr8 (128-182)||(8559394-8559448)
chr8 (271-329)||(29072504-29072562)
chr8 (320-354)||(30153513-30153547)
chr8 (362-407)||(3066118-3066163)
chr8 (308-372)||(6501496-6501559)
chr8 (363-407)||(7187916-7187960)
chr8 (315-355)||(23489805-23489845)
chr8 (314-354)||(24362330-24362370)
chr8 (147-179)||(29973901-29973933)
chr8 (298-354)||(31551847-31551903)
[»] chr7 (12 HSPs)
chr7 (304-397)||(27012121-27012213)
chr7 (296-366)||(23948381-23948450)
chr7 (308-366)||(44287849-44287906)
chr7 (315-354)||(40688891-40688930)
chr7 (307-384)||(38957325-38957402)
chr7 (147-183)||(9204334-9204370)
chr7 (295-371)||(17285052-17285127)
chr7 (304-336)||(23112677-23112709)
chr7 (304-336)||(23112732-23112764)
chr7 (308-372)||(37775983-37776046)
chr7 (375-407)||(40714957-40714989)
chr7 (308-372)||(42720885-42720948)
[»] chr4 (5 HSPs)
chr4 (325-384)||(47665841-47665899)
chr4 (314-372)||(36768844-36768901)
chr4 (314-363)||(55258425-55258473)
chr4 (295-354)||(50699157-50699217)
chr4 (315-407)||(6424163-6424254)
[»] chr2 (8 HSPs)
chr2 (313-397)||(5461140-5461222)
chr2 (363-407)||(9956934-9956978)
chr2 (311-354)||(28341328-28341371)
chr2 (319-354)||(38738423-38738458)
chr2 (304-354)||(894053-894103)
chr2 (280-354)||(43886567-43886641)
chr2 (315-372)||(18841008-18841064)
chr2 (315-367)||(28369805-28369856)
[»] chr1 (5 HSPs)
chr1 (301-354)||(41319497-41319550)
chr1 (304-372)||(18556021-18556088)
chr1 (288-354)||(26777389-26777456)
chr1 (326-384)||(13810516-13810573)
chr1 (308-353)||(1118409-1118454)
[»] scaffold0027 (1 HSPs)
scaffold0027 (288-347)||(145901-145960)
[»] chr6 (4 HSPs)
chr6 (308-355)||(34625735-34625782)
chr6 (361-403)||(11602816-11602858)
chr6 (300-354)||(32577476-32577530)
chr6 (281-350)||(6294552-6294621)
[»] chr5 (5 HSPs)
chr5 (364-407)||(29816969-29817012)
chr5 (317-355)||(19045568-19045606)
chr5 (308-397)||(15086699-15086787)
chr5 (141-181)||(36636337-36636377)
chr5 (333-397)||(39219817-39219880)
[»] chr3 (6 HSPs)
chr3 (315-350)||(25086281-25086316)
chr3 (307-365)||(31221711-31221769)
chr3 (325-407)||(39981665-39981745)
chr3 (315-376)||(10268477-10268537)
chr3 (313-354)||(49636838-49636879)
chr3 (304-352)||(36301990-36302038)


Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 188 - 541
Target Start/End: Original strand, 1979293 - 1979647
Alignment:
Q  188 cattaataacgatgcactaatgaccatatttacaactgtccctgttcagattcgaactatgtcgtacaaagtcaagctcttacatgaagcacggacacca 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1979293 cattaataacgatgcactaatgaccatatttacaactgtccctgttcagattcgaactatgtcgtacaaagtcaagctcttacatgaagcacggacacca 1979392  T
Q  288 gacacgccactaacaagtcaacaccggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacaccggacacgcctttga 387  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1979393 gacacgccactaacaagtcaacaccggtaataatttgagaaaattaattaattaaatgtaatcacatagtgtcaatgtcagacaccggacacgcctttga 1979492  T
Q  388 tcagaggtgtgggtgctacaccaacaaatgcatttccccttttctcaaaataaaagaaaattaacaatatgttagccctattttctctcttcaatacaaa 487  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1979493 tcagaggtatgggtgctacactaacaaatgcatttccccttttctcaaaataaaagaaaattaacaatatgctagccctattttctctcttcaatacaaa 1979592  T
Q  488 caaac-nnnnnnncccttcaaaacccaaatgttgaaattgaagtaccaccattta 541  Q
    |||||        ||||||||||||||||||||||||||||||||||||||||||    
T  1979593 caaacaaaaaaaacccttcaaaacccaaatgttgaaattgaagtaccaccattta 1979647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 1979060 - 1979240
Alignment:
Q  11 cacagaacaaattattctatctagcagctaagnnnnnnngatgaacatttcattcatgttatttaacttactagaaaatgaacaatacctctgttagaag 110  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1979060 cacagaacaaattattctatctagcagctaagaaaaaaagatgaacatttcattcatgttatttaacttactagaaaatgaacaatacctctgttagaag 1979159  T
Q  111 aaaacaaaaacgagttcaatggaaatgtaatgttgatgtaaattagatttacactgacatccaatgagaactcctcgcatt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1979160 aaaacaaaaacgagttcaatggaaatgtaatgttgatgtaaattagatttacactgacatccaatgagaactcctcgcatt 1979240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 20154133 - 20154076
Alignment:
Q  308 acaccggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtc 366  Q
    |||||||||| || |||||||||| ||||||||||||| |||||||| |||||||||||    
T  20154133 acaccggtaaaaacttgaaaaaatgaattaattaaatgcaatcacat-gtgtcagtgtc 20154076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 366
Target Start/End: Original strand, 20203337 - 20203394
Alignment:
Q  308 acaccggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtc 366  Q
    |||||||||| || |||||||||| ||||||||||||| |||||||| |||||||||||    
T  20203337 acaccggtaaaaacttgaaaaaatgaattaattaaatgcaatcacat-gtgtcagtgtc 20203394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 308 - 405
Target Start/End: Original strand, 2517108 - 2517209
Alignment:
Q  308 acaccggtaataatttgaaaaaattaattaattaaatgtaatcaca----tagtgtcagtgtcagacaccggacacgcctttgatcagaggtgtgggtgc 403  Q
    |||||||||||||||||| ||||| |||||||| |||||||  |||    |  |||  |||||||| ||| |||| ||||||||||||| ||||||||||    
T  2517108 acaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagataccagacatgcctttgatcagaagtgtgggtgc 2517207  T
Q  404 ta 405  Q
    ||    
T  2517208 ta 2517209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 8559394 - 8559448
Alignment:
Q  128 aatggaaatgtaatgttgatgtaaattagatttacactgacatccaatgagaact 182  Q
    |||||||||| | ||||||||||||  || ||||||| |||||||||||||||||    
T  8559394 aatggaaatgcactgttgatgtaaaacagttttacacagacatccaatgagaact 8559448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 29072562 - 29072504
Alignment:
Q  271 atgaagcacggacaccagacacgccactaacaagtcaacaccggtaataatttgaaaaa 329  Q
    ||||||||| |||||| |||||| |||| ||| ||| |||||| |||||||||||||||    
T  29072562 atgaagcacagacaccggacacgacactcacacgtcgacaccgataataatttgaaaaa 29072504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 354
Target Start/End: Complemental strand, 30153547 - 30153513
Alignment:
Q  320 atttgaaaaaattaattaattaaatgtaatcacat 354  Q
    |||| ||||||||||||||||||||||||||||||    
T  30153547 attttaaaaaattaattaattaaatgtaatcacat 30153513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 3066118 - 3066163
Alignment:
Q  362 gtgtcagacaccggacacgcctttgatcagaggtgtgggtgctaca 407  Q
    ||||||||||||||||| ||||| ||||||||||||  ||||||||    
T  3066118 gtgtcagacaccggacatgccttagatcagaggtgtcagtgctaca 3066163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 372
Target Start/End: Original strand, 6501496 - 6501559
Alignment:
Q  308 acaccggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacac 372  Q
    |||| ||||||||||||| | ||| || ||||||||||||| ||||| ||||| |||||||||||    
T  6501496 acactggtaataatttgagagaatgaaataattaaatgtaaccacat-gtgtcggtgtcagacac 6501559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 7187960 - 7187916
Alignment:
Q  363 tgtcagacaccggacacgcctttgatcagaggtgtgggtgctaca 407  Q
    ||||||||| |  |||||||||||||||||||||| |||||||||    
T  7187960 tgtcagacaacatacacgcctttgatcagaggtgtcggtgctaca 7187916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 23489805 - 23489845
Alignment:
Q  315 taataatttgaaaaaattaattaattaaatgtaatcacata 355  Q
    ||||||||||||||||| | |||||||||||||| ||||||    
T  23489805 taataatttgaaaaaatgatttaattaaatgtaaccacata 23489845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 24362330 - 24362370
Alignment:
Q  314 gtaataatttgaaaaaattaattaattaaatgtaatcacat 354  Q
    |||| ||||||||||||| |||||||| |||||||||||||    
T  24362330 gtaaaaatttgaaaaaatgaattaattgaatgtaatcacat 24362370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 29973901 - 29973933
Alignment:
Q  147 tgtaaattagatttacactgacatccaatgaga 179  Q
    |||||||||| ||||||||||||||||||||||    
T  29973901 tgtaaattagttttacactgacatccaatgaga 29973933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 354
Target Start/End: Complemental strand, 31551903 - 31551847
Alignment:
Q  298 taacaagtcaacaccggtaataatttgaaaaaattaattaattaaatgtaatcacat 354  Q
    ||||| ||||| |||||||||||||||| ||||| ||| |||| ||| |||||||||    
T  31551903 taacatgtcaataccggtaataatttgagaaaatgaataaattgaatataatcacat 31551847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 397
Target Start/End: Original strand, 27012121 - 27012213
Alignment:
Q  304 gtcaacaccggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacaccggacacgcctttgatcagaggtgt 397  Q
    |||||||| ||| ||||||||| ||||| ||||||||||||||| |||||| |||||  |||| |||||| || | ||||| ||||||||||||    
T  27012121 gtcaacactggtcataatttgagaaaatgaattaattaaatgtattcacat-gtgtctatgtcggacaccagatatgccttcgatcagaggtgt 27012213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 23948381 - 23948450
Alignment:
Q  296 actaacaagtcaacaccggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtc 366  Q
    ||||||| ||| |||| | ||||||||||||||||| |||||||| |||||||||| || |||||||||||    
T  23948381 actaacatgtcgacactgataataatttgaaaaaatcaattaattgaatgtaatcatat-gtgtcagtgtc 23948450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 366
Target Start/End: Original strand, 44287849 - 44287906
Alignment:
Q  308 acaccggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtc 366  Q
    |||||||||| || |||||||||| ||||||||||||| |||||||| |||||||||||    
T  44287849 acaccggtaaaaacttgaaaaaatgaattaattaaatgcaatcacat-gtgtcagtgtc 44287906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 40688891 - 40688930
Alignment:
Q  315 taataatttgaaaaaattaattaattaaatgtaatcacat 354  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  40688891 taataatttgataaaatgaattaattaaatgtaatcacat 40688930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 384
Target Start/End: Complemental strand, 38957402 - 38957325
Alignment:
Q  307 aacaccggtaataatttga-aaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacaccggacacgcctt 384  Q
    ||||| ||| ||||||||| |||||| |||||||| ||||||||||||| |||||||||||  ||||  ||||||||||    
T  38957402 aacactggtgataatttgagaaaaataaattaattgaatgtaatcacat-gtgtcagtgtcgtacactagacacgcctt 38957325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 9204370 - 9204334
Alignment:
Q  147 tgtaaattagatttacactgacatccaatgagaactc 183  Q
    |||||||||| |||||||||||||||||| |||||||    
T  9204370 tgtaaattagttttacactgacatccaataagaactc 9204334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 371
Target Start/End: Original strand, 17285052 - 17285127
Alignment:
Q  295 cactaacaagtcaacaccggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagaca 371  Q
    ||||||||||||||||||  ||||||||||| | ||| |  ||||| ||| ||||||||| ||||| ||||||||||    
T  17285052 cactaacaagtcaacaccaataataatttgagagaatgatataattcaatttaatcacat-gtgtctgtgtcagaca 17285127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 23112709 - 23112677
Alignment:
Q  304 gtcaacaccggtaataatttgaaaaaattaatt 336  Q
    ||||| |||||||||||||||||||||||||||    
T  23112709 gtcaataccggtaataatttgaaaaaattaatt 23112677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 23112764 - 23112732
Alignment:
Q  304 gtcaacaccggtaataatttgaaaaaattaatt 336  Q
    ||||| |||||||||||||||||||||||||||    
T  23112764 gtcaataccggtaataatttgaaaaaattaatt 23112732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 372
Target Start/End: Original strand, 37775983 - 37776046
Alignment:
Q  308 acaccggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacac 372  Q
    ||||| ||| |||||||| ||||| |  ||||||||||||||||||| |||||||||| ||||||    
T  37775983 acaccagtagtaatttgagaaaatgacataattaaatgtaatcacat-gtgtcagtgtaagacac 37776046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 40714989 - 40714957
Alignment:
Q  375 gacacgcctttgatcagaggtgtgggtgctaca 407  Q
    ||||||||||||||||||||||| |||||||||    
T  40714989 gacacgcctttgatcagaggtgtcggtgctaca 40714957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 372
Target Start/End: Complemental strand, 42720948 - 42720885
Alignment:
Q  308 acaccggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacac 372  Q
    |||||| ||||||||||||||||| |  |||||||||||||| | || ||||||||||| |||||    
T  42720948 acaccgctaataatttgaaaaaatcacataattaaatgtaattatat-gtgtcagtgtctgacac 42720885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 47665899 - 47665841
Alignment:
Q  325 aaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacaccggacacgcctt 384  Q
    |||||||||||||||||||||||||||||| ||||| ||||  ||||||||||| |||||    
T  47665899 aaaaaattaattaattaaatgtaatcacat-gtgtcggtgttggacaccggacatgcctt 47665841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 36768901 - 36768844
Alignment:
Q  314 gtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacac 372  Q
    |||||||||||| | |||||||||||| ||||||||||||| ||||||||||| |||||    
T  36768901 gtaataatttgagagaattaattaattgaatgtaatcacat-gtgtcagtgtccgacac 36768844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 55258425 - 55258473
Alignment:
Q  314 gtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagt 363  Q
    |||| |||||||||||| ||||||||||||||||||||||| ||||||||    
T  55258425 gtaaaaatttgaaaaaactaattaattaaatgtaatcacat-gtgtcagt 55258473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 50699157 - 50699217
Alignment:
Q  295 cactaacaagtcaacaccggtaataatttg-aaaaaattaattaattaaatgtaatcacat 354  Q
    |||||||| || ||||||||||| |||||| ||||||||| |||||| |||||||||||||    
T  50699157 cactaacacgttaacaccggtaaaaatttgaaaaaaattagttaattgaatgtaatcacat 50699217  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 407
Target Start/End: Complemental strand, 6424254 - 6424163
Alignment:
Q  315 taataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacaccggacacgcctttgatcagaggtgtgggtgctaca 407  Q
    |||||| || |||| || |||||||| |||| |||||||| ||||| ||||||||||||  ||| ||||| |||||||  ||| |||||||||    
T  6424254 taataacttaaaaagatgaattaattcaatgcaatcacat-gtgtcggtgtcagacaccaaacatgccttcgatcagaattgtcggtgctaca 6424163  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 397
Target Start/End: Complemental strand, 5461222 - 5461140
Alignment:
Q  313 ggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacaccggacacgcctttgatcagaggtgt 397  Q
    ||||||||||||| | ||| |||||||| |||||||||||||  ||||| |||||||||| |||||  |||| ||||| ||||||    
T  5461222 ggtaataatttgagataataaattaattgaatgtaatcacat--tgtcaatgtcagacactggacataccttcgatcaaaggtgt 5461140  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 9956978 - 9956934
Alignment:
Q  363 tgtcagacaccggacacgcctttgatcagaggtgtgggtgctaca 407  Q
    |||||||||||||||| ||||||||||||||| || |||||||||    
T  9956978 tgtcagacaccggacatgcctttgatcagaggcgtcggtgctaca 9956934  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 28341328 - 28341371
Alignment:
Q  311 ccggtaataatttgaaaaaattaattaattaaatgtaatcacat 354  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||    
T  28341328 ccggtaatagtttgagaaaatgaattaattaaatgtaatcacat 28341371  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 354
Target Start/End: Original strand, 38738423 - 38738458
Alignment:
Q  319 aatttgaaaaaattaattaattaaatgtaatcacat 354  Q
    ||||||| ||||||||||||||||||||||||||||    
T  38738423 aatttgagaaaattaattaattaaatgtaatcacat 38738458  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 354
Target Start/End: Original strand, 894053 - 894103
Alignment:
Q  304 gtcaacaccggtaataatttgaaaaaattaattaattaaatgtaatcacat 354  Q
    |||||||| ||||| |||||||||||||||||||||| ||  |||||||||    
T  894053 gtcaacactggtaaaaatttgaaaaaattaattaattgaacataatcacat 894103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 43886567 - 43886641
Alignment:
Q  280 ggacaccagacacgccactaacaagtcaacaccggtaataatttgaaaaaattaattaattaaatgtaatcacat 354  Q
    |||||||||||||  |||||||| ||| ||||| |||||||||| | | ||| |||| |||||| ||||||||||    
T  43886567 ggacaccagacacaacactaacacgtcgacaccagtaataatttaagataatgaattgattaaacgtaatcacat 43886641  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 18841064 - 18841008
Alignment:
Q  315 taataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacac 372  Q
    |||||||||||||||||||  ||||||| |||||| ||| |||||| |||||||||||    
T  18841064 taataatttgaaaaaattacataattaagtgtaattaca-agtgtcggtgtcagacac 18841008  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 28369856 - 28369805
Alignment:
Q  315 taataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtca 367  Q
    ||||||||||| ||||| |||||| |||||||||| |||| ||||||||||||    
T  28369856 taataatttgagaaaatgaattaaataaatgtaataacat-gtgtcagtgtca 28369805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 41319550 - 41319497
Alignment:
Q  301 caagtcaacaccggtaataatttgaaaaaattaattaattaaatgtaatcacat 354  Q
    |||||||| |||| |||||||||| ||||| ||||||||| |||||||||||||    
T  41319550 caagtcaaaaccgataataatttgtaaaaaataattaattgaatgtaatcacat 41319497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 18556088 - 18556021
Alignment:
Q  304 gtcaacaccggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacac 372  Q
    |||||||||||||||||||| | ||||| |  ||||| | ||||||||||| |||||||||||||||||    
T  18556088 gtcaacaccggtaataatttaataaaatgacataattgactgtaatcacat-gtgtcagtgtcagacac 18556021  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 26777456 - 26777389
Alignment:
Q  288 gacacgccactaacaagtcaacaccggtaataatttgaa-aaaattaattaattaaatgtaatcacat 354  Q
    |||||| |||| | |||||||||||| |||||||||||| ||||| | |||||| |||||||||||||    
T  26777456 gacacgacactgagaagtcaacaccgataataatttgaaaaaaatgacttaattgaatgtaatcacat 26777389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 384
Target Start/End: Original strand, 13810516 - 13810573
Alignment:
Q  326 aaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacaccggacacgcctt 384  Q
    |||||| |||| ||| || |||||||||| ||||| |||||||||||||||||||||||    
T  13810516 aaaaatgaatttattgaacgtaatcacat-gtgtcggtgtcagacaccggacacgcctt 13810573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 1118454 - 1118409
Alignment:
Q  308 acaccggtaataatttgaaaaaattaattaattaaatgtaatcaca 353  Q
    |||| ||| ||||||||||||||| |||||||| ||||||||||||    
T  1118454 acacgggtgataatttgaaaaaatgaattaattgaatgtaatcaca 1118409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 145901 - 145960
Alignment:
Q  288 gacacgccactaacaagtcaacaccggtaataatttgaaaaaattaattaattaaatgta 347  Q
    |||||| |||| ||| |||||||||||||||| ||||| ||||| |||||||| ||||||    
T  145901 gacacgacactgacatgtcaacaccggtaatagtttgagaaaataaattaattcaatgta 145960  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 34625735 - 34625782
Alignment:
Q  308 acaccggtaataatttgaaaaaattaattaattaaatgtaatcacata 355  Q
    |||||| ||||||||||| ||||| |||||||| ||||||||||||||    
T  34625735 acaccgataataatttgagaaaatgaattaattgaatgtaatcacata 34625782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 11602858 - 11602816
Alignment:
Q  361 agtgtcagacaccggacacgcctttgatcagaggtgtgggtgc 403  Q
    |||||| |||||||||||| ||||||||||||||||| |||||    
T  11602858 agtgtcggacaccggacacacctttgatcagaggtgttggtgc 11602816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 32577530 - 32577476
Alignment:
Q  300 acaagtcaacaccggtaataatttgaaaaaattaattaattaaatgtaatcacat 354  Q
    ||||||||| |||||| || |||||| ||||| |||||||| |||||||||||||    
T  32577530 acaagtcaagaccggtgatgatttgagaaaatgaattaattgaatgtaatcacat 32577476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 6294621 - 6294552
Alignment:
Q  281 gacaccagacacgccactaacaagtcaacaccggtaataatttgaaaaaattaattaattaaatgtaatc 350  Q
    ||||||||||||| |||| |||  ||||||| | ||||||||||| ||||| |||||||| |||| ||||    
T  6294621 gacaccagacacggcactcacacatcaacactgataataatttgagaaaatgaattaattgaatgcaatc 6294552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 407
Target Start/End: Complemental strand, 29817012 - 29816969
Alignment:
Q  364 gtcagacaccggacacgcctttgatcagaggtgtgggtgctaca 407  Q
    ||||||||||||||| | |||||||||||||||| |||||||||    
T  29817012 gtcagacaccggacatgtctttgatcagaggtgtcggtgctaca 29816969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 19045568 - 19045606
Alignment:
Q  317 ataatttgaaaaaattaattaattaaatgtaatcacata 355  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  19045568 ataatttaaaaaaatgaattaattaaatgtaatcacata 19045606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 397
Target Start/End: Original strand, 15086699 - 15086787
Alignment:
Q  308 acaccggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacaccggacacgcctttgatcagaggtgt 397  Q
    |||| ||||||||||||| ||| | ||||| || || |||||||||| ||||  ||||| |||||||||||| | |||||||| ||||||    
T  15086699 acacgggtaataatttgagaaagtgaattatttgaacgtaatcacat-gtgttggtgtcggacaccggacacacatttgatcaaaggtgt 15086787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 36636337 - 36636377
Alignment:
Q  141 tgttgatgtaaattagatttacactgacatccaatgagaac 181  Q
    ||||| |||||| ||| ||||||||||||||||||||||||    
T  36636337 tgttggtgtaaaatagttttacactgacatccaatgagaac 36636377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 39219880 - 39219817
Alignment:
Q  333 aattaattaaatgtaatcacatagtgtcagtgtcagacaccggacacgcctttgatcagaggtgt 397  Q
    |||||||  ||| |||||||||| | || ||||| ||||||||||| ||||||||||||||||||    
T  39219880 aattaatcgaatttaatcacata-tatctgtgtcggacaccggacatgcctttgatcagaggtgt 39219817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 350
Target Start/End: Complemental strand, 25086316 - 25086281
Alignment:
Q  315 taataatttgaaaaaattaattaattaaatgtaatc 350  Q
    |||||||||||||||||||||||||| |||||||||    
T  25086316 taataatttgaaaaaattaattaattgaatgtaatc 25086281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 31221711 - 31221769
Alignment:
Q  307 aacaccggtaataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgt 365  Q
    |||||||||||||||||| || |||  ||||||| || |||||||||| ||||||||||    
T  31221711 aacaccggtaataatttggaataatagattaatttaacgtaatcacattgtgtcagtgt 31221769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 407
Target Start/End: Complemental strand, 39981745 - 39981665
Alignment:
Q  325 aaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacaccggacacgcctttgatcagaggtgtgggtgctaca 407  Q
    |||||||||||||||| ||||||| ||||| ||||| || || |||||||| |||||||| || |||||||||  ||||||||    
T  39981745 aaaaaattaattaatttaatgtaagcacat-gtgtcggtttcggacaccgg-cacgccttcgaacagaggtgtcagtgctaca 39981665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 376
Target Start/End: Complemental strand, 10268537 - 10268477
Alignment:
Q  315 taataatttgaaaaaattaattaattaaatgtaatcacatagtgtcagtgtcagacaccgga 376  Q
    ||||||||||||||||| |  ||||| | |||||| ||| ||||||||||||||||||||||    
T  10268537 taataatttgaaaaaatcacataatttagtgtaattaca-agtgtcagtgtcagacaccgga 10268477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 49636879 - 49636838
Alignment:
Q  313 ggtaataatttgaaaaaattaattaattaaatgtaatcacat 354  Q
    ||||||||||||| ||||| |||||||| |||||||||||||    
T  49636879 ggtaataatttgagaaaatgaattaattgaatgtaatcacat 49636838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 36301990 - 36302038
Alignment:
Q  304 gtcaacaccggtaataatttgaaaaaattaattaattaaatgtaatcac 352  Q
    ||||||| |||||||||| ||| ||||| |||||||| |||||||||||    
T  36301990 gtcaacatcggtaataatgtgagaaaataaattaattgaatgtaatcac 36302038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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