View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_low_1 (Length: 844)
Name: NF20963_low_1
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 422 - 831
Target Start/End: Original strand, 32378242 - 32378653
Alignment:
| Q |
422 |
ttttaataatccgcatcttgcatgg--ttcaacaaagagcatacaaatatttgacgttaacataaatttaaatttaccgctaagagcatacaaataatcc |
519 |
Q |
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| T |
32378242 |
ttttaataatccgcgtcttgcatggggttcaacaaagagcatacaaatatttgacgttaacataaatttaaatttaccgctaagagcatacaaataatcc |
32378341 |
T |
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| Q |
520 |
acgtcttgcatgagattctccaatgaacatacaaattggagcttcactccaaacatgcgttagtatatatcttaccgctaagacaaacacttagtgattt |
619 |
Q |
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| T |
32378342 |
acatcttgcatgggattctccaatgagcatacaaattggagcttcactccaaacatgcgttagtataaatcttaccgctaagacaaacacttagtgattt |
32378441 |
T |
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| Q |
620 |
agacggaagatggataaagataatagccacaagatcggaaccaataaagctctccaagaagaaatatgaagaatgtatattggcatggacatggcttgga |
719 |
Q |
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| T |
32378442 |
agacggaagatggataaagataatagccacaagatcggaaccaataaagctctccaagaagaaatatgaagaatgtatattagcatggacatggcttgga |
32378541 |
T |
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| Q |
720 |
aggaaggtgtctcccatctcagtgtgactctaaagttctcattgattttagttactaacaattgtactatgaaaggttgtatttgtactctatttcggac |
819 |
Q |
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| T |
32378542 |
aggaaggtgtctcccatctcagtgtgactctaaagttctcattgattttagttactaacaattgtactatgaaaggttgtatttgtactctatttcggac |
32378641 |
T |
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| Q |
820 |
gcaaccttatga |
831 |
Q |
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| T |
32378642 |
gcaaccttatga |
32378653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 100 - 347
Target Start/End: Original strand, 32377924 - 32378168
Alignment:
| Q |
100 |
cgtttctttatgtggacacnnnnnnntcatgggaaaaaatgttggcgggttatttggtaaagaagtggtattgggatcaatgcaatttttctatggtttc |
199 |
Q |
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| T |
32377924 |
cgtttctttatgtggacacaaaaaaatcatgggaaaaaatgttggcgggttatttggtaaagaagtggtattgggatcaatgcaatttttctatggtttc |
32378023 |
T |
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| Q |
200 |
aaatcttcaaaggaataactcaataaaaaatatatatatttaaaggaagttttgttaggtgtgagtccgtgacaatagtgtcaaaaccaaatttatttat |
299 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32378024 |
aaatcttcaaaggaataactcaataaaaaaaa---atatttaaaggaagttttgttaggtgtgagtccgtgacaatagtgtcaaaaccaaattgatttat |
32378120 |
T |
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| Q |
300 |
aatttctgtataaagttgaatttatttaattcatttcttaaaaaagag |
347 |
Q |
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| T |
32378121 |
aatttctgtataaagttgaatttatttaattcatttcttaaaaaagag |
32378168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 552 - 608
Target Start/End: Complemental strand, 17126516 - 17126460
Alignment:
| Q |
552 |
aaattggagcttcactccaaacatgcgttagtatatatcttaccgctaagacaaaca |
608 |
Q |
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| T |
17126516 |
aaattggaacttcgctccaaacgtgcattagtatatatcttaccgctaaaacaaaca |
17126460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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