View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_low_14 (Length: 439)
Name: NF20963_low_14
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 35255102 - 35254854
Alignment:
| Q |
1 |
tgcagatgttcaagcatattaattaaataaagaaaatacnnnnnnnngaacaagtaaataaagaaaatactattcggttgaagcagaagataaggctgac |
100 |
Q |
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| T |
35255102 |
tgcagatgttcaagcatattaattaaataaagaaaatacttttttttgaacaagtaaataaagaaaatactattcggttgaagcagaagataaggctgac |
35255003 |
T |
|
| Q |
101 |
tgccaagatagtaaggagaaatataaattttgacctgtcctttaacaggctggtgcccattccaaaacacataagtttcgattacatctacaccaccttc |
200 |
Q |
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| T |
35255002 |
tgccaagatagtaaggagaaatataaattttgacctgtcctttaacaggctggtgcccattccaaaacacataagtttcgattacatctacaccaccttc |
35254903 |
T |
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| Q |
201 |
cttggcctttgctatgagatcaggccacatctaaaatgacatgaaatac |
249 |
Q |
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| T |
35254902 |
cttggcctttgctatgagatcaggccacatctaaaatgacatgaaatac |
35254854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 278 - 420
Target Start/End: Complemental strand, 35254835 - 35254693
Alignment:
| Q |
278 |
gtaaattgaattgtagaaagttatcagaaatggttatgtgagtagattaagtgaaattaattaatgattgaaacaaacatgtccctgttttatcagttac |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35254835 |
gtaaattgaattgtagaaagttatcagaaatggttatgtgagtagattaagtgaaattaattaatgatcgaaacaaacatgtccctgttttatcagttac |
35254736 |
T |
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| Q |
378 |
tatttaagtgacagaatttattcctacgttttaggaatgaaca |
420 |
Q |
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| T |
35254735 |
tatttaagtgacagaatttattcctacgttttaggaatgaaca |
35254693 |
T |
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