View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_low_16 (Length: 435)
Name: NF20963_low_16
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 6 - 418
Target Start/End: Complemental strand, 4111078 - 4110661
Alignment:
| Q |
6 |
agaaaaagtgaggttttttgagaaatgacccacgataggtgaaggtgaaaagatcgaaactttggaagcagaaagagccattagagaagaataacgaaaa |
105 |
Q |
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| T |
4111078 |
agaaaaagtgaggttttttgagaaatgacccacgataggtgaaggtgaaaagatcgaaactttggaagcagaaagagccattagagaagaataacgaaaa |
4110979 |
T |
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| Q |
106 |
gggtcgtcgagaaatgattga---agga----aggaagagaaatggttaacaatggcggctttgtgtggttgtgaagagggtgagggacaaaggtgatat |
198 |
Q |
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| T |
4110978 |
gggtcgttgagaaa--attgagaaaggattgaaggaagagaaatggttaacaatggcggctttgtgtggttgtgaagagggtgagggacaaaggtgatat |
4110881 |
T |
|
| Q |
199 |
aagtagtgatggagaagggtaatatggggatatgaaattaatgtggatcgttggatgagttttgacgtggagggttgagatttaaagagaagaagaggcg |
298 |
Q |
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| T |
4110880 |
aagtagtgatggagaagggtaatatggggatatgaaattaatgtggatcgttggatgagttttgacgtggagggttgagatttaaagagaagaagaggcg |
4110781 |
T |
|
| Q |
299 |
tgtggcgagctcgtggcctaatgtagtgtgaacatgaaaagtaggaaatatccgatccacgtagtaatcaagtattgatcttcattttcggtccaattat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4110780 |
tgtggcgagctcgtggcctaatgtagtgtgaacatgaaaagtaggaaatatccgatccacgtagtaatcaagtattgatcttcattttcggtccaattat |
4110681 |
T |
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| Q |
399 |
tgttgcctcactcgctctat |
418 |
Q |
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| T |
4110680 |
tgttgcctcactcgctctat |
4110661 |
T |
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