View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_low_2 (Length: 781)
Name: NF20963_low_2
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 727; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 14 - 764
Target Start/End: Original strand, 1021235 - 1021985
Alignment:
| Q |
14 |
aatatacggtatatatataccacctgaaacaatgggttgtacggtgtctaaactcgacaacgaagaaacggtacgacggtgcaaagaacgccgccgtctc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1021235 |
aatatacggtatatatataccacctgaaacaatgggttgcactgtgtctaaactcgacaacgaagaaacggtacgacggtgcaaagaacgccgccgtctc |
1021334 |
T |
|
| Q |
114 |
atgaaggaagcactttacgctcgccactacctcgcagcggctcattctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1021335 |
atgaaggaagcactttacgctcgccactacctcgcagcggctcattctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccg |
1021434 |
T |
|
| Q |
214 |
ccggtgaacctctcgccgtctccgacgacattcccgctgttttcatcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgt |
313 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1021435 |
ccggtgaacctctctccgtctccgacgacattcccgctgttttcatcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgt |
1021534 |
T |
|
| Q |
314 |
aacaaacacaaaactccgtacagtttctgaaatacgtcgccggaaaattccggtgaagcttcctcacattctttccgattcaagcgtttgttcaacgccg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1021535 |
aacaaacacaaaactccgtacagtttctgaaatacgtcgccggaaaattccggtgaagcttcctcacattctttccgattcaagcgtttgttcaacgccg |
1021634 |
T |
|
| Q |
414 |
agaagcgagtttccgaactggttcattccaaccgcgcatcaaaatgaatcaacagcttctgaaacttcttctgtttggaattgggaaaattttcaacctc |
513 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1021635 |
agaagcgattttccgaactggttcattccaaccgcgcatcaaaatgaatcaacagcttctgaaacttcttctgtttggaattgggagaattttcaacctc |
1021734 |
T |
|
| Q |
514 |
ctccttctccaccaaactccgaatatttccggcaacgttctcaaccgccgaatcacaaactggaaaatccagaatccgatacatcatcagaatcgttcta |
613 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1021735 |
ctccttctccaccaaactccgaatatttccggcaacgttctcaaccgccgaatcacaaactggaaaatccagaatccgatacatcatcagaatcgttcta |
1021834 |
T |
|
| Q |
614 |
caacatgttccactcgaaaattcatcttcagaatcacaagactgaaacggaacaagaactagatcgtttggaaacggaacgtgaggaggttcggtgtagt |
713 |
Q |
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| T |
1021835 |
caacatgttccactcgaaaattcatcttcagaatcacaagactgaaacggaacaagaactagatcgtttggaaacggaacgtgaggaggttcggtgtagt |
1021934 |
T |
|
| Q |
714 |
gattgggaggattgttatggttcaacaagctcatcagatagagatgaagtt |
764 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1021935 |
gattgggaggattgttatcgttcaacaagctcatcagatagagatgaagtt |
1021985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 155 - 441
Target Start/End: Original strand, 4970737 - 4971014
Alignment:
| Q |
155 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgtt |
254 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||| ||| |
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| T |
4970737 |
tcattctgattactataactctcttcgcctcaccggttccgcactctccaccttcgctgccagtgaacctctcgccgtcttcgacgacattcccgccgtt |
4970836 |
T |
|
| Q |
255 |
ttcatcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgcc |
354 |
Q |
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||| |||||||||| |||||| | | ||||||||||| |||| || | ||||||| ||||||||| ||||| ||||||||| | |||||| |
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| T |
4970837 |
ttcgtcaacacagtaaaaactcataaacaaccgccacctc------ctccagccacagtaacaactacaaaactctgtacattttctgaaacatgtcgcc |
4970930 |
T |
|
| Q |
355 |
ggaaaattccggtgaagcttcctcacattctttccgattca---------agcgtttgttcaacgccgagaagcgagtttccgaactggttcattc |
441 |
Q |
| |
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||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4970931 |
------------tgaagcttcctcacattctttccaattcaagcatttgtagcatttgttcaacgccgagaagcgagtttccgaactggttcattc |
4971014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 155 - 461
Target Start/End: Complemental strand, 6345091 - 6344803
Alignment:
| Q |
155 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgtt |
254 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||| |
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| T |
6345091 |
tcattctgattactgtaactctcttcgcctcaccggttccgcactctccaccttcgccgccagtgaacctctcgtcgtctccgacgacattcccgccgtt |
6344992 |
T |
|
| Q |
255 |
ttcatcaacacagttaaaacttgtcagacaccgccacctcctcctactccttccgccgtaacaaacacaaaactccgtacagtttctgaaatacgtcgcc |
354 |
Q |
| |
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||| |||||||||| |||||| ||| || |||||||| |||| || ||||||||| ||||||||| ||||| ||||||||| | |||||| |
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| T |
6344991 |
ttcgtcaacacagtaaaaactcatcaacaacagccacctc------ctccagccaccgtaacaactacaaaactctgtacattttctgaaacatgtcgcc |
6344898 |
T |
|
| Q |
355 |
ggaaaattccggtgaagcttcctcacattctttccgattcaagcgtttgttcaacgccgagaagcgagtttccgaactggttcattccaaccgcgcatca |
454 |
Q |
| |
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||||||||||||||||| |||| ||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6344897 |
------------tgaagcttcctcacattttttctgattcaagcatttgttcaatgtcgagaagcgagtttccgaactggttcattccaaccgcgcatca |
6344810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 263
Target Start/End: Complemental strand, 31344725 - 31344534
Alignment:
| Q |
72 |
aacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcattctgattactgta |
171 |
Q |
| |
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|||||||| || || |||||||||||||| || |||||||| ||||| ||||| | || ||||| || ||||||| || ||||| || || ||||| |
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| T |
31344725 |
aacgaagatacagtgcgacggtgcaaagaccgtcgccgtcttatgaaagaagctgtctatgctcgtcatcacctcgccgctgctcactccgactactgcc |
31344626 |
T |
|
| Q |
172 |
actctcttcgcctcaccggttccgcactctccactttcgccgccggtgaacctctcgccgtctccgacgacattcccgctgttttcatcaac |
263 |
Q |
| |
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|| || || |||||||| |||| ||||||||||||||| |||||||||||||| |||| || || ||| |||||| |||||||||||| |
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| T |
31344625 |
gttccctccgtctcaccggcaccgccctctccactttcgcctccggtgaacctctctccgtttctgataacactcccgccgttttcatcaac |
31344534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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