View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20963_low_25 (Length: 382)
Name: NF20963_low_25
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 51 - 364
Target Start/End: Original strand, 15433386 - 15433699
Alignment:
| Q |
51 |
aatgtcctatcgaggaccaaattcatatgcttgtattaaaattggagagtcattccctttacaatgcataaaataaattttaagaactgatagaagaaaa |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15433386 |
aatgtcctatcgaggaccaaattcatatgcttgtattaaaattggagagtcattccctttacaatgcataaaataaattttaagaactgatagaagaaaa |
15433485 |
T |
|
| Q |
151 |
aagtaaataataaacatcattgctgcacgaagttgagctgtcttccaatgagcattcaacgccttactcgtcttaaaagtttgaaaatttacgggtgcac |
250 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15433486 |
aagtaaataataaacataattgctgcacgaagttgagctgtcttccaatgagcattcaacgccttactcgtcttaaaagtttgaaaaattacgggtgcac |
15433585 |
T |
|
| Q |
251 |
tgagttagggaaatgctgtcaaaaagaaacaggtgaggattgtcaaaaaatagctcatgtgcaggatactgaaatacagaactgggtagtgcacataatc |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15433586 |
tgagttagggaaatgctgtcaaaaagaaacaggtgatgattggcaaaaaatagctcatgtgcaggatactgaaatacagaactgggtagtgcacataatc |
15433685 |
T |
|
| Q |
351 |
agaggaggaggagg |
364 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15433686 |
agaggaggaggagg |
15433699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 17678532 - 17678433
Alignment:
| Q |
62 |
gaggaccaaattcatatgcttgtattaaaattggagagtcattccctttacaatgcataaaataaatttt-aagaactgatagaagaaaaaagtaaataa |
160 |
Q |
| |
|
|||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||||| | ||||||||||||||||| |
|
|
| T |
17678532 |
gaggactaaattcatatgtttgtattaacattggagagtcattccctttacaatgaataaaataaattttaaaaaactgacaaaagaaaaaagtaaataa |
17678433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 15352827 - 15352703
Alignment:
| Q |
189 |
tgtcttccaatgagcattcaacgccttactcgtcttaaaagtttgaaaatttacgggtgcactgagttagggaaatgctgtcaaaaagaa-acaggtgag |
287 |
Q |
| |
|
|||||||| | |||||||||| |||||||| |||||||||||||| ||||||| || |||| |||||||||| || | ||| ||| |||| ||||||||| |
|
|
| T |
15352827 |
tgtcttccgacgagcattcaatgccttactggtcttaaaagtttggaaatttatggttgcagtgagttaggggaacgatgt-aaagagaacacaggtgag |
15352729 |
T |
|
| Q |
288 |
gattgtcaaaaaatagctcatgtgca |
313 |
Q |
| |
|
||||| | |||||||||||||||||| |
|
|
| T |
15352728 |
gattggccaaaaatagctcatgtgca |
15352703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 310
Target Start/End: Complemental strand, 15319518 - 15319386
Alignment:
| Q |
178 |
cgaagttgagctgtcttccaatgagcattcaacgccttactcgtcttaaaagtttgaaaatttacgggtgcactgagttagggaaatgctgtcaaaaaga |
277 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||||||| || | |||||||| ||||||| | |||| ||||| | |||| | ||| |||| || |
|
|
| T |
15319518 |
cgaagttgacatgtcttccgatgagcattcaaagccttactggtttggaaagtttgggaatttacagctgcagcgagttggagaaacgatgtgaaaagga |
15319419 |
T |
|
| Q |
278 |
aacaggtgaggattgtcaaaaaatagctcatgt |
310 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| |
|
|
| T |
15319418 |
aacaggtgaggattggccaaaaatagctcatgt |
15319386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 307
Target Start/End: Complemental strand, 16412567 - 16412449
Alignment:
| Q |
189 |
tgtcttccaatgagcattcaacgccttactcgtcttaaaagtttgaaaatttacgggtgcactgagttagggaaatgctgtcaaaaagaa-acaggtgag |
287 |
Q |
| |
|
|||||||| |||||||||||| |||||||| |||| |||| ||||| ||||| | | |||| |||||||||||| ||| ||| |||| ||||||||| |
|
|
| T |
16412567 |
tgtcttccgatgagcattcaatgccttactagtctgaaaaatttgagaatttgcagttgcagcgagttagggaaacaatgt-aaagagaacacaggtgag |
16412469 |
T |
|
| Q |
288 |
gattgtcaaaaaatagctca |
307 |
Q |
| |
|
||||| |||||||| ||||| |
|
|
| T |
16412468 |
gattggcaaaaaattgctca |
16412449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 178 - 364
Target Start/End: Complemental strand, 8185401 - 8185215
Alignment:
| Q |
178 |
cgaagttgagctgtcttccaatgagcattcaacgccttactcgtcttaaaagtttgaaaatttacgggtgcactgagttagggaaatgctgtcaaaaaga |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
8185401 |
cgaagttgagctgtcttccaatgagcattcaacgccttacccgtcttaaaagtttgaaaatttacgggtgccctgagttagggaaatgctgtcaaaagga |
8185302 |
T |
|
| Q |
278 |
aacaggtgaggattgtcaaaaaatagctcatgtgcaggatactgaaatacagaactgggtagtgcacataatcagaggaggaggagg |
364 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
8185301 |
aacaggtgaggattggcaaaaaatagctcatgtgcaggatattgaaatacagaactgggtaatgcacataatcggaggaggaggagg |
8185215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 14667590 - 14667689
Alignment:
| Q |
62 |
gaggaccaaattcatatgcttgtattaaaattggagagtcattccctttacaatgcataaaataaatttt-aagaactgatagaagaaaaaagtaaataa |
160 |
Q |
| |
|
|||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| || ||| |||| ||||||||||||||||| |
|
|
| T |
14667590 |
gaggactaaattcatatgtttgtattaacattggagagtcattccctttacaatgaataaaataaattttaaaaaaccgataaaagaaaaaagtaaataa |
14667689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University