View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20963_low_27 (Length: 374)
Name: NF20963_low_27
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20963_low_27 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 374
Target Start/End: Complemental strand, 49273727 - 49273362
Alignment:
| Q |
8 |
atgaccaccactcaaagctgaaattatcaaattgtaagtcacaaataatggctaaaaattaacaggcaaagtnnnnnnnnntacaaccaaaagataagat |
107 |
Q |
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| T |
49273727 |
atgaccaccactcaaagctgaaattatcaaattgtaagtcacaaataatggctaaaaattaacaggcaaagtaaaaaaaa-tacaaccaaaagataagat |
49273629 |
T |
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| Q |
108 |
ttaagaggagggagggaacttaccaaatcattcctgttaaaggaacgtcatactgaaagaatgctcctattccaaggaatgactccattgaaattggaaa |
207 |
Q |
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| T |
49273628 |
ttaagaggagggagggaacttaccaaatcattcctgttaaaggaacggcatactgaaagaacgctcctattccaaggaatgactccattgaaattggaaa |
49273529 |
T |
|
| Q |
208 |
caagagttttttcacaatcagaagagaatttcgcaaataattcaagtataatcacattcaactagtattaagtaccaatagaaaatgcagctctaagcaa |
307 |
Q |
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| T |
49273528 |
caagagttttttcacaatcagaagagaatttcacaaataattcaagtataatcacattcaactagtattaagtaccaatagaaaatgcagctctaagcaa |
49273429 |
T |
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| Q |
308 |
cctaattcagatttaaaaactagcaaccaagaaaaagctacatggaagcaaagggtaatagaggact |
374 |
Q |
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| T |
49273428 |
cctaattcagatttaaaaactagcaaccaagaaaaagctacatggaagtaaagggtaatagaggact |
49273362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 106 - 372
Target Start/End: Original strand, 49273751 - 49274017
Alignment:
| Q |
106 |
atttaagaggagggagggaacttaccaaatcattcctgttaaaggaacgtcatactgaaagaatgctcctattccaaggaatgactccattgaaattgga |
205 |
Q |
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| T |
49273751 |
atttaagaggagggagggaactcgccaaatcattcctgttaaaggaacggcatactgaaagaacgctcctattccaaggaatgactccattgaaattgga |
49273850 |
T |
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| Q |
206 |
aacaagagttttttcacaatcagaagagaatttcgcaaataattcaagtataatcacattcaactagtattaagtaccaatagaaaatgcagct-ctaag |
304 |
Q |
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| T |
49273851 |
atc-ctagttttttcacaatcagccgagaatttcatatataatacaagtataatcacattcaaccagtatgaagtaccaaca-aaaatgaagctcctacg |
49273948 |
T |
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| Q |
305 |
caacctaattcagatttaaaaactagcaaccaagaaaaagctacatggaag-caaagggtaatagagga |
372 |
Q |
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| T |
49273949 |
caacctgatccagatttaaaaactagcaaccaagaaaaagcttcatggaagtcaaagggtaacagagga |
49274017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 98 - 372
Target Start/End: Complemental strand, 49255890 - 49255616
Alignment:
| Q |
98 |
aagataagatttaagaggagggagggaacttaccaaatcattcctgttaaaggaacgtcatactgaaagaatgctcctattccaaggaatgactccattg |
197 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||| | | |||||| |||| ||||||| | ||||||||| ||||||||||||| |
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| T |
49255890 |
aagataaaatttaagaggagggagggaactcaccaaatcattccagctgaaggaatagcatagcgaaagaactcacctattccatcaaatgactccattg |
49255791 |
T |
|
| Q |
198 |
aaattggaaacaagagttttttcacaatcagaagagaatttcgcaaataattcaagtataatcacattcaactagtattaagtaccaatagaaaatgcag |
297 |
Q |
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| T |
49255790 |
aaattgtaaacc-gcgttttttcacaatcagcagagaatttcatatataatccaaggataatcacattcaaccagtatgaagtgccaatagaaaatgcag |
49255692 |
T |
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| Q |
298 |
ct-ctaagcaacctaattcagatttaaaaactagcaaccaagaaaaagctacatggaagcaaagggtaatagagga |
372 |
Q |
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| T |
49255691 |
ctcctaagctacctaatccagatttaaaaactaataaccaacaaaatgctacatggaatccaagggtaacagagga |
49255616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 113 - 365
Target Start/End: Complemental strand, 49268598 - 49268347
Alignment:
| Q |
113 |
aggagggagggaacttaccaaatcattcctgttaaaggaacgtcatactgaaagaatgctcctattccaaggaatgactccattgaaattggaaacaaga |
212 |
Q |
| |
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||||||||| ||||| ||||||||||||||| | | |||| | || ||||||| |||||| ||||||||||| |||||||||||| |||| | || |
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| T |
49268598 |
aggagggagtgaact-accaaatcattcctgctgatggaatagcgtatcgaaagaactctcctactccaaggaatggctccattgaaatcggaaccc-ga |
49268501 |
T |
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| Q |
213 |
gttttttcacaatcagaagagaatttcgcaaataattcaagtataatcacattcaactagtattaagtaccaatagaaaatgcagct-ctaagcaaccta |
311 |
Q |
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|||| ||||||||||| ||||||||| | ||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||||||| |
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| T |
49268500 |
gtttcttcacaatcagtggagaatttcatatataatccaagtataatcacattcaaccagtatgaagtaccaatagaaagtgcagctcctaagcaaccta |
49268401 |
T |
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| Q |
312 |
attcagatttaaaaactagcaaccaagaaaaagctacatggaagcaaagggtaa |
365 |
Q |
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| T |
49268400 |
atccagatttaaaaactaacagccaacaaaaagctacatggaagcacagggtaa |
49268347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 49255958 - 49255892
Alignment:
| Q |
8 |
atgaccaccactcaaagctgaaattatcaaat-tgtaagtcacaaataatggctaaaaattaacagg |
73 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||| || |||||||||||||||| |
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| T |
49255958 |
atgaccaccactcaaagctgaaatgatcaaatatgtaagtcacaaatcatagctaaaaattaacagg |
49255892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 365
Target Start/End: Complemental strand, 29356986 - 29356870
Alignment:
| Q |
250 |
caagtataatcacattcaactagtattaagtaccaatagaaaatgcagctc-taagcaacctaattcagatttaaaaactagcaaccaagaaaaagctac |
348 |
Q |
| |
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|||| ||||||||||| ||| || || |||| |||||||||||| | |||| ||| | ||||||| |||||| ||||||||||||||| ||||| ||| |
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| T |
29356986 |
caagaataatcacattaaaccaggatgaagtcccaatagaaaattctgctcctaaaccacctaatctagatttgaaaactagcaaccaataaaaaactat |
29356887 |
T |
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| Q |
349 |
atggaagcaaagggtaa |
365 |
Q |
| |
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|||||||||||| |||| |
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| T |
29356886 |
atggaagcaaagtgtaa |
29356870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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