View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20963_low_3 (Length: 719)

Name: NF20963_low_3
Description: NF20963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20963_low_3
NF20963_low_3
[»] chr6 (15 HSPs)
chr6 (132-403)||(31563867-31564137)
chr6 (406-668)||(31563572-31563834)
chr6 (1-134)||(31564324-31564457)
chr6 (237-370)||(33417180-33417314)
chr6 (2-131)||(33385707-33385837)
chr6 (590-666)||(33409063-33409139)
chr6 (590-668)||(33398153-33398231)
chr6 (17-76)||(33281320-33281376)
chr6 (277-319)||(9165487-9165529)
chr6 (5-59)||(33416538-33416592)
chr6 (17-76)||(33301947-33302003)
chr6 (473-511)||(677907-677945)
chr6 (88-134)||(33416490-33416536)
chr6 (291-372)||(33397600-33397681)
chr6 (291-372)||(33408511-33408592)
[»] chr2 (3 HSPs)
chr2 (5-134)||(17443374-17443503)
chr2 (237-364)||(17442488-17442616)
chr2 (459-511)||(27084336-27084388)
[»] scaffold0428 (1 HSPs)
scaffold0428 (17-76)||(12876-12932)
[»] chr5 (3 HSPs)
chr5 (458-511)||(35017109-35017162)
chr5 (476-510)||(13287354-13287388)
chr5 (459-512)||(14873589-14873642)
[»] chr7 (1 HSPs)
chr7 (469-511)||(38134335-38134377)
[»] chr3 (1 HSPs)
chr3 (461-511)||(11610578-11610628)
[»] chr4 (1 HSPs)
chr4 (463-512)||(11596296-11596345)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-120; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 132 - 403
Target Start/End: Complemental strand, 31564137 - 31563867
Alignment:
Q  132 gctgtttacatgcatctaattgcnnnnnnnntatgtttagatccatttgtaattttgtgagaagacatacaattggtattttcatatgtaaaatacgaaa 231  Q
    |||||||||||||||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564137 gctgtttacatgcatctaattgcaaaaacaatatgtttagatccatttataattttgtgagaagacatacaattggtattttcatatgtaaaatacgaaa 31564038  T
Q  232 aagttagatagaaaacaagaaccttctgtttcttgaggagctgtgcacttgatgtaatgtctgattctgtaacaacaaggccaggctcaaccgcatcact 331  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564037 aagttagatagaaaacaagaaccttctgtttcttgagga-ctgtgcacttgatgtaatgtctgattctgtaacaacaaggccaggctcaaccgcatcact 31563939  T
Q  332 gtttgactctgttgcagctgcaacttgttcctttccattattaacacagacacaaacacgacacttacactg 403  Q
    |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||    
T  31563938 gtttgattctgttgcagctgcaacttcttcctttctattattaacacagacacaaacacgacacgtacactg 31563867  T

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Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 406 - 668
Target Start/End: Complemental strand, 31563834 - 31563572
Alignment:
Q  406 tgacgtaattgaatgtaatcatatgtgtaacatgtgtctgtgtcagacacccgcacgtgtccaacatcgagacacgcctaatctgcggagtgtatgtgct 505  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31563834 tgacgtaattcaatgtaatcatatgtgtaacatgtgtttgtgtcagacacccgcgcgtgtccaacatcgagacacgcctaatctgcggagtgtatgtgct 31563735  T
Q  506 tcataggctgttattcacacataaaacattgtctcggtgtcggacacacgacacatcacatataattgcgtcatannnnnnnnnaaaattagtattagtg 605  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||           |||||||||||||||    
T  31563734 tcataggctgttattcacacagaaaacattgtctcggtgtcggacacacaacacatcacatataattgcgtcattttttttttttaaattagtattagtg 31563635  T
Q  606 ttaacatgtcaatatattcatgtcgagtcatgtgtccgtgtctgtgcctcatataatttactc 668  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31563634 ttaacatgtcaatatattcatgtcgagtcatgtgtccgtgtcagtgcctcatataatttactc 31563572  T

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Target: chr6; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 31564324 - 31564457
Alignment:
Q  1 tagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564324 tagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaagg 31564423  T
Q  101 ctcgagtaatggtttcaatttcatcttatttgct 134  Q
    ||||||||||||||||||||||||||||||||||    
T  31564424 ctcgagtaatggtttcaatttcatcttatttgct 31564457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 237 - 370
Target Start/End: Original strand, 33417180 - 33417314
Alignment:
Q  237 agatagaaaacaagaaccttctgtttcttgaggagctg-tgcacttgatgtaatgtctgattctgtaacaacaaggccaggctcaaccgcatcactgttt 335  Q
    ||||||| ||||| |||||  ||||||||||||||||| ||||||| | ||||| |||||||||||||||||| ||||||||||||| ||||| || | |    
T  33417180 agatagacaacaaaaacctggtgtttcttgaggagctggtgcacttaacgtaatctctgattctgtaacaacagggccaggctcaactgcatccctatct 33417279  T
Q  336 gactctgttgcagctgcaacttgttcctttccatt 370  Q
    | ||| |||| |||| ||| || ||||||||||||    
T  33417280 gcctcggttgtagctacaaattcttcctttccatt 33417314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 33385837 - 33385707
Alignment:
Q  2 agtacaagttgaagatgaagaagttgcaattgcatccgaga-caaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaagg 100  Q
    |||||||||||||| ||||||||||||||||||||   | | ||||||||| | ||||||| ||||||||||||||||| |||||  | |||||  ||||    
T  33385837 agtacaagttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggacaaaccggaattacagcgtcagatgaagg 33385738  T
Q  101 ctcgagtaatggtttcaatttcatcttattt 131  Q
    || ||| || |||| ||||||||||||||||    
T  33385737 cttgagcaaaggttgcaatttcatcttattt 33385707  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 590 - 666
Target Start/End: Original strand, 33409063 - 33409139
Alignment:
Q  590 aaaattagtattagtgttaacatgtcaatatattcatgtcgagtcatgtgtccgtgtctgtgcctcatataatttac 666  Q
    |||||||||||| |||| ||||||||||||||||  |||||||| ||||||||||||| |||  |||||||||||||    
T  33409063 aaaattagtattggtgtcaacatgtcaatatatttgtgtcgagttatgtgtccgtgtcagtgtttcatataatttac 33409139  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 590 - 668
Target Start/End: Original strand, 33398153 - 33398231
Alignment:
Q  590 aaaattagtattagtgttaacatgtcaatatattcatgtcgagtcatgtgtccgtgtctgtgcctcatataatttactc 668  Q
    |||||||||||| |||| ||||||||||||||||  |||||||| || |||||||||| |||  |||||||||||||||    
T  33398153 aaaattagtattggtgtcaacatgtcaatatatttgtgtcgagttatatgtccgtgtcagtgtttcatataatttactc 33398231  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 33281376 - 33281320
Alignment:
Q  17 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 76  Q
    |||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  33281376 tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac 33281320  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 277 - 319
Target Start/End: Original strand, 9165487 - 9165529
Alignment:
Q  277 cacttgatgtaatgtctgattctgtaacaacaaggccaggctc 319  Q
    ||||||||||||| |||||||||||||||||| ||||||||||    
T  9165487 cacttgatgtaatatctgattctgtaacaacagggccaggctc 9165529  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 33416592 - 33416538
Alignment:
Q  5 acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatct 59  Q
    |||||||||||||||||  |||||||||||||| || ||||||| ||||||||||    
T  33416592 acaagttgaagatgaagcggttgcaattgcatctgaaacaaacagcaacttatct 33416538  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 33302003 - 33301947
Alignment:
Q  17 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 76  Q
    |||||| ||||| ||||||||||||||||||| ||   ||||||||||||||||||||||    
T  33302003 tgaagaggttgctattgcatccgagacaaacatca---tatctaattctaatggacaaac 33301947  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 473 - 511
Target Start/End: Original strand, 677907 - 677945
Alignment:
Q  473 cgagacacgcctaatctgcggagtgtatgtgcttcatag 511  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  677907 cgagacactcctaatctgaggagtgtatgtgcttcatag 677945  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 33416536 - 33416490
Alignment:
Q  88 cttcagacaaaggctcgagtaatggtttcaatttcatcttatttgct 134  Q
    |||||||  ||||||||||||| |||||| |||||||||||||||||    
T  33416536 cttcagatgaaggctcgagtaaaggtttccatttcatcttatttgct 33416490  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 33397600 - 33397681
Alignment:
Q  291 tctgattctgtaacaacaaggccaggctcaaccgcatcactgtttgactctgttgcagctgcaacttgttcctttccattat 372  Q
    ||||||||||| | |||| ||| ||||||||| |||||||||| || || ||||||||| | | | | ||||||||||||||    
T  33397600 tctgattctgtgataacatggcaaggctcaactgcatcactgtctgtctgtgttgcagcggaatcatcttcctttccattat 33397681  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 372
Target Start/End: Original strand, 33408511 - 33408592
Alignment:
Q  291 tctgattctgtaacaacaaggccaggctcaaccgcatcactgtttgactctgttgcagctgcaacttgttcctttccattat 372  Q
    ||||||||||| | |||| ||| ||||||||| |||||||||| || || ||||||||| | | | | ||||||||||||||    
T  33408511 tctgattctgtgataacatggcaaggctcaactgcatcactgtctgtctgtgttgcagcggaatcatcttcctttccattat 33408592  T

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Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 17443374 - 17443503
Alignment:
Q  5 acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaaggctcg 104  Q
    ||||||||||  ||||||||||||||||||||  || ||||||||   | ||||||| ||||||||||||||| |||||||  |||||||  |||||| |    
T  17443374 acaagttgaacgtgaagaagttgcaattgcatttgaaacaaacaatggcgtatctaactctaatggacaaaccagcattacagcttcagatgaaggcttg 17443473  T
Q  105 agtaatggtttcaatttcatcttatttgct 134  Q
    |  || |||| |||||||||||||||||||    
T  17443474 accaaaggttgcaatttcatcttatttgct 17443503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 237 - 364
Target Start/End: Complemental strand, 17442616 - 17442488
Alignment:
Q  237 agatagaaaacaagaaccttctgtttcttgaggagctg-tgcacttgatgtaatgtctgattctgtaacaacaaggccaggctcaaccgcatcactgttt 335  Q
    |||||||||||||||||||| |  ||||||| |||||| ||||||| ||||| |||||||| |||||||||||   |||||||||||  |||| |||| |    
T  17442616 agatagaaaacaagaaccttttccttcttgaagagctggtgcactttatgtattgtctgatgctgtaacaacagaaccaggctcaactacatcgctgtct 17442517  T
Q  336 gactctgttgcagctgcaacttgttcctt 364  Q
    | ||| ||||||| || ||||| ||||||    
T  17442516 gtctcagttgcagttggaacttcttcctt 17442488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 511
Target Start/End: Original strand, 27084336 - 27084388
Alignment:
Q  459 cacgtgtccaacatcgagacacgcctaatctgcggagtgtatgtgcttcatag 511  Q
    ||||||||||||| |||||||||||||||| | ||||||| | ||||||||||    
T  27084336 cacgtgtccaacaccgagacacgcctaatcggaggagtgtctctgcttcatag 27084388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 12876 - 12932
Alignment:
Q  17 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 76  Q
    |||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  12876 tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac 12932  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 458 - 511
Target Start/End: Original strand, 35017109 - 35017162
Alignment:
Q  458 gcacgtgtccaacatcgagacacgcctaatctgcggagtgtatgtgcttcatag 511  Q
    ||||||||||||||||| ||||||||||||| | |||||||  |||||||||||    
T  35017109 gcacgtgtccaacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 35017162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 510
Target Start/End: Complemental strand, 13287388 - 13287354
Alignment:
Q  476 gacacgcctaatctgcggagtgtatgtgcttcata 510  Q
    ||||||||||||||| |||||||||||||||||||    
T  13287388 gacacgcctaatctgaggagtgtatgtgcttcata 13287354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 512
Target Start/End: Original strand, 14873589 - 14873642
Alignment:
Q  459 cacgtgtccaacatcgagacacgcctaatctgcggagtgtatgtgcttcatagg 512  Q
    ||||||||||||| || ||||||||||||| | |||||||  ||||||||||||    
T  14873589 cacgtgtccaacaccgggacacgcctaatccgaggagtgtccgtgcttcatagg 14873642  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 469 - 511
Target Start/End: Complemental strand, 38134377 - 38134335
Alignment:
Q  469 acatcgagacacgcctaatctgcggagtgtatgtgcttcatag 511  Q
    |||||| ||||||||||||| | ||||||||||||||||||||    
T  38134377 acatcgggacacgcctaatccgaggagtgtatgtgcttcatag 38134335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 461 - 511
Target Start/End: Original strand, 11610578 - 11610628
Alignment:
Q  461 cgtgtccaacatcgagacacgcctaatctgcggagtgtatgtgcttcatag 511  Q
    ||||||| |||||| ||||||||||||||| |||||||  |||||||||||    
T  11610578 cgtgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11610628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 512
Target Start/End: Complemental strand, 11596345 - 11596296
Alignment:
Q  463 tgtccaacatcgagacacgcctaatctgcggagtgtatgtgcttcatagg 512  Q
    ||||| |||||| ||||||||||||||| |||||||  ||||||||||||    
T  11596345 tgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatagg 11596296  T

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